RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 BLVRAP53004 296 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 RHOAP61586 193 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 NIPAL4Q0D2K0 466 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 TTLL9Q3SXZ7 439 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 TSTD2Q5T7W7 516 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 ARMC8Q8IUR7 673 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 CARNMT1Q8N4J0 409 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 PDPRQ8NCN5 879 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 LRCH3Q96II8 777 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 LHPPQ9H008 270 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 CCM2LQ9NUG4 571 aaPredicted RBP13.37□□□□□ -0.27
USP42-206ENST00000479544 TESMINQ9Y4I5 508 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 CCDC162PA2VCL2 907 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 TBKBP1A7MCY6 615 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 CDC7O00311 574 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 RHOCP08134 193 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 CD83Q01151 205 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 SEMG2Q02383 582 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 SYTL3Q4VX76 610 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 COL13A1Q5TAT6 717 aaPredicted RBP13.37□□□□□ -0.27
USP42-206ENST00000479544 DCP1BQ8IZD4 617 aaKnown RBP13.37□□□□□ -0.27
USP42-206ENST00000479544 Q8N9G6 341 aaPredicted RBP13.37□□□□□ -0.27
USP42-206ENST00000479544 PSMG2Q969U7 264 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 LRRC3Q9BY71 257 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 CRISPLD1Q9H336 500 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 C14orf119Q9NWQ9 140 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 RCOR3Q9P2K3 495 aaPredicted RBP13.37□□□□□ -0.27
USP42-206ENST00000479544 PCDHGC4Q9Y5F7 938 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 PKD1L3Q7Z443 1732 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 MYO9BQ13459 2157 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 A6NL46 340 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 CXCR6O00574 342 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 TSPAN1O60635 241 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 ABCB7O75027 752 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 BMP10O95393 424 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 PIGRP01833 764 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 RRM2P31350 389 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 THPOP40225 353 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 ZNF789Q5FWF6 425 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 TRNP1Q6NT89 227 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 FAM131AQ6UXB0 335 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 NKAPQ8N5F7 415 aaKnown RBP13.37□□□□□ -0.27
USP42-206ENST00000479544 OLIG1Q8TAK6 271 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 TRPM4Q8TD43 1214 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 ARNTL2Q8WYA1 636 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 PCED1BQ96HM7 432 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 BCO2Q9BYV7 579 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 STMN3Q9NZ72 180 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 ATP6V1HQ9UI12 483 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 PTBP2Q9UKA9 531 aaKnown RBP13.37□□□□□ -0.27
USP42-206ENST00000479544 ARID1AO14497 2285 aa13.37□□□□□ -0.27
USP42-206ENST00000479544 SOWAHBA6NEL2 793 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 CSF2P04141 144 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 HLA-DQB2P05538 268 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 KCNA5P22460 613 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 GRM5P41594 1212 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 AGTR2P50052 363 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 LBX1P52954 281 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 OR2B6P58173 313 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 OR4D2P58180 307 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 LILRA4P59901 499 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 ACSM2AQ08AH3 577 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 NOGQ13253 232 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 ZNF284Q2VY69 593 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 CES4AQ5XG92 561 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 ACSM2BQ68CK6 577 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 DUS1LQ6P1R4 473 aaKnown RBP13.36□□□□□ -0.27
USP42-206ENST00000479544 LUZP2Q86TE4 346 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 LRRC52Q8N7C0 313 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 BIRC8Q96P09 236 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 INTS10Q9NVR2 710 aaKnown RBP13.36□□□□□ -0.27
USP42-206ENST00000479544 RAPGEFL1Q9UHV5 662 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 IFRD1O00458 451 aaPredicted RBP13.36□□□□□ -0.27
USP42-206ENST00000479544 ITGALP20701 1170 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 IFNA8P32881 189 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 PHKG1Q16816 387 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 RNASE12Q5GAN4 147 aaKnown RBP13.36□□□□□ -0.27
USP42-206ENST00000479544 FAM91A1Q658Y4 838 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 NSMCE3Q96MG7 304 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 OLAHQ9NV23 265 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 TMLHEQ9NVH6 421 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 ADPRHL2Q9NX46 363 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.36□□□□□ -0.27
USP42-206ENST00000479544 PCDHB9Q9Y5E1 797 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 CCDC88AQ3V6T2 1871 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 ASCC3Q8N3C0 2202 aaKnown RBP13.36□□□□□ -0.27
USP42-206ENST00000479544 MYL12BO14950 172 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 NIPSNAP2O75323 286 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 TSPAN9O75954 239 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 UMPSP11172 480 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 PAX3P23760 479 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 CD97P48960 835 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 NANOGP8Q6NSW7 305 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 ASB8Q9H765 288 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 NANOGQ9H9S0 305 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 MKS1Q9NXB0 559 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 MARCH2Q9P0N8 246 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 STYXL1Q9Y6J8 313 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 TUBGCP6Q96RT7 1819 aa13.36□□□□□ -0.27
USP42-206ENST00000479544 TIAM2Q8IVF5 1701 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms