RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 PLEKHS1Q5SXH7 462 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 TMTC4Q5T4D3 741 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 LCN10Q6JVE6 187 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 FATE1Q969F0 183 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 MOCOSQ96EN8 888 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 LRFN5Q96NI6 719 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 TSGA13Q96PP4 275 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 RANBP9Q96S59 729 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 CD180Q99467 661 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 NLNQ9BYT8 704 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 NUP62CLQ9H1M0 184 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 LIMA1Q9UHB6 759 aaKnown RBP16.8■□□□□ 0.28
VIM-204ENST00000478746 SHOC2Q9UQ13 582 aa16.8■□□□□ 0.28
VIM-204ENST00000478746 TLCD2A6NGC4 264 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 MFSD11O43934 449 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 CD86P42081 329 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 CDK18Q07002 472 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 GALNT3Q14435 633 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 PIGHQ14442 188 aaPredicted RBP16.79■□□□□ 0.28
VIM-204ENST00000478746 PLCL1Q15111 1095 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 FAM69BQ5VUD6 431 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 TMC3Q7Z5M5 1100 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 TRAPPC5Q8IUR0 188 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 DSELQ8IZU8 1212 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 ZBTB2Q8N680 514 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 CPT1BQ92523 772 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 ZNF501Q96CX3 271 aaPredicted RBP16.79■□□□□ 0.28
VIM-204ENST00000478746 SGSM3Q96HU1 749 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 HRASLS2Q9NWW9 162 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 TMEM63CQ9P1W3 806 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 B3GNT3Q9Y2A9 372 aa16.79■□□□□ 0.28
VIM-204ENST00000478746 COPG1Q9Y678 874 aaKnown RBP16.79■□□□□ 0.28
VIM-204ENST00000478746 SPTBP11277 2137 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 PIKFYVEQ9Y2I7 2098 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 F5H423 210 aaPredicted RBP16.78■□□□□ 0.28
VIM-204ENST00000478746 HNRNPRO43390 633 aaKnown RBP16.78■□□□□ 0.28
VIM-204ENST00000478746 KCNJ13O60928 360 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 ZBTB11O95625 1053 aaPredicted RBP16.78■□□□□ 0.28
VIM-204ENST00000478746 SLC4A1P02730 911 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 MMP2P08253 660 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 PIRTP0C851 137 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 MYBL1P10243 752 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 CDK11BP21127 795 aaKnown RBP16.78■□□□□ 0.28
VIM-204ENST00000478746 TMEM115Q12893 351 aaPredicted RBP16.78■□□□□ 0.28
VIM-204ENST00000478746 NAA30Q147X3 362 aaPredicted RBP16.78■□□□□ 0.28
VIM-204ENST00000478746 PAFAH1B3Q15102 231 aaKnown RBP16.78■□□□□ 0.28
VIM-204ENST00000478746 RPE65Q16518 533 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 KYNUQ16719 465 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 KHDC1Q4VXA5 237 aaKnown RBP16.78■□□□□ 0.28
VIM-204ENST00000478746 VWA5B1Q5TIE3 1220 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 C11orf96Q7Z7L8 435 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 GPR150Q8NGU9 434 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 LRRN4Q8WUT4 740 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 MARVELD3Q96A59 401 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 CLIP3Q96DZ5 547 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 TRIM11Q96F44 468 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 GPR63Q9BZJ6 419 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 HAUS4Q9H6D7 363 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 MAGEE1Q9HCI5 957 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 LATS2Q9NRM7 1088 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 NFKBIL1Q9UBC1 381 aaPredicted RBP16.78■□□□□ 0.28
VIM-204ENST00000478746 MYO6Q9UM54 1294 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 DIDO1Q9BTC0 2240 aaKnown RBP16.78■□□□□ 0.28
VIM-204ENST00000478746 C2CD3Q4AC94 2353 aa16.78■□□□□ 0.28
VIM-204ENST00000478746 OTOGQ6ZRI0 2925 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 SEC16AO15027 2179 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 LRRC10BA6NIK2 292 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 CD48P09326 243 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 ATP1A4Q13733 1029 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 GTF2H3Q13889 308 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 PRAMEF17Q5VTA0 474 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 LYPLAL1Q5VWZ2 237 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 NCBP2-AS2Q69YL0 99 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 ZNF571Q7Z3V5 609 aaPredicted RBP16.77■□□□□ 0.28
VIM-204ENST00000478746 GDAP1Q8TB36 358 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 TTC25Q96NG3 672 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 ILKAPQ9H0C8 392 aaPredicted RBP16.77■□□□□ 0.28
VIM-204ENST00000478746 PSMD13Q9UNM6 376 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 CSMD1Q96PZ7 3565 aa16.77■□□□□ 0.28
VIM-204ENST00000478746 POLEQ07864 2286 aa16.77■□□□□ 0.27
VIM-204ENST00000478746 APCP25054 2843 aa16.77■□□□□ 0.27
VIM-204ENST00000478746 MDC1Q14676 2089 aaKnown RBP16.76■□□□□ 0.27
VIM-204ENST00000478746 ARHGAP10A1A4S6 786 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 OR5K3A6NET4 321 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 DDX3XO00571 662 aaKnown RBP eCLIP16.76■□□□□ 0.278e-32■■■□□ 14.7
VIM-204ENST00000478746 PRF1P14222 555 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 BPIP17213 487 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 GLRBP48167 497 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 SLC25A11Q02978 314 aaKnown RBP16.76■□□□□ 0.27
VIM-204ENST00000478746 ASIC2Q16515 512 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 CCDC183Q5T5S1 534 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 ARMC6Q6NXE6 501 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 AMZ2Q86W34 360 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 CCNYQ8ND76 341 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 FAM71BQ8TC56 605 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 BRSK1Q8TDC3 778 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 SOHLH2Q9NX45 425 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 TMPRSS11EQ9UL52 423 aa16.76■□□□□ 0.27
VIM-204ENST00000478746 POP7O75817 140 aaKnown RBP16.75■□□□□ 0.27
VIM-204ENST00000478746 CAPN1P07384 714 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms