RNA–Protein interactions for RNA: ENST00000478050.1

SF3B6-202, Transcript of splicing factor 3b subunit 6, humanhuman

TSL 2

Gene SF3B6, Length 720 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-202ENST00000478050 POPDC3Q9HBV1 291 aa4.92□□□□□ -1.62
SF3B6-202ENST00000478050 RGS18Q9NS28 235 aa4.92□□□□□ -1.62
SF3B6-202ENST00000478050 MPP6Q9NZW5 540 aa4.92□□□□□ -1.62
SF3B6-202ENST00000478050 GMIPQ9P107 970 aa4.92□□□□□ -1.62
SF3B6-202ENST00000478050 COPG1Q9Y678 874 aaKnown RBP4.92□□□□□ -1.62
SF3B6-202ENST00000478050 ZNF106Q9H2Y7 1883 aaKnown RBP4.92□□□□□ -1.62
SF3B6-202ENST00000478050 PLXNA4Q9HCM2 1894 aa4.92□□□□□ -1.62
SF3B6-202ENST00000478050 ANKRD12Q6UB98 2062 aa4.92□□□□□ -1.62
SF3B6-202ENST00000478050 LOC285095A0A1B0GVY8 99 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 BBIP1A8MTZ0 92 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 J3KR12 359 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 UBDO15205 165 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 CFLARO15519 480 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 RAMP2O60895 175 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 GPC4O75487 556 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 RPP40O75818 363 aaKnown RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 BCAS2O75934 225 aaPredicted RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SRP72O76094 671 aaKnown RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SORBS2O94875 1100 aaKnown RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 STAMBPO95630 424 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 CBX7O95931 251 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 EPOP01588 193 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 IGLV3-27P01718 113 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 ITGB1P05556 798 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 MMP2P08253 660 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 OR4Q2P0C623 313 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 ATXN1LP0C7T5 689 aaKnown RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 CCDC166P0CW27 439 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 COL6A1P12109 1028 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 XRCC1P18887 633 aaPredicted RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 IMPDH1P20839 514 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 FDXRP22570 491 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 YWHAQP27348 245 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 CALRP27797 417 aaKnown RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 CTGFP29279 349 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 PBX3P40426 434 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 OR1G1P47890 313 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 ERFP50548 548 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SUOXP51687 545 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 THOP1P52888 689 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 AQP4P55087 323 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SH3BGRP55822 239 aaPredicted RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 STX1BP61266 288 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 PSME3P61289 254 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 NAA20P61599 178 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 FAM189BP81408 668 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 DSC2Q02487 901 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SLC10A7Q0GE19 358 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 EFEMP1Q12805 493 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SMARCB1Q12824 385 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 TRAP1Q12931 704 aaKnown RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 PEX6Q13608 980 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 PTK2BQ14289 1009 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 FASTKQ14296 549 aaKnown RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 ZNF235Q14590 738 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 POLD3Q15054 466 aaPredicted RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 GRAMD1BQ3KR37 738 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 ZNF385BQ569K4 471 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 NOMO2Q5JPE7 1267 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SIRPB2Q5JXA9 342 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 PPM1LQ5SGD2 360 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 ZBTB37Q5TC79 503 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 IRAK1BP1Q5VVH5 260 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 LPCAT4Q643R3 524 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 TMEM198Q66K66 360 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 CCSAPQ6IQ19 270 aaPredicted RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 ZNF280DQ6N043 979 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 MRNIPQ6NTE8 343 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 C6orf15Q6UXA7 325 aaPredicted RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 FAM43BQ6ZT52 329 aaPredicted RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SLC24A5Q71RS6 500 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 TFAP2DQ7Z6R9 452 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 CUZD1Q86UP6 607 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 ZNF354CQ86Y25 554 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 MFN1Q8IWA4 741 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 COLGALT2Q8IYK4 626 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 MARVELD2Q8N4S9 558 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 HIPK4Q8NE63 616 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 OR13J1Q8NGT2 312 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 ARRDC2Q8TBH0 407 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SPPL2BQ8TCT7 592 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 ZFAND2BQ8WV99 257 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 FBXO32Q969P5 355 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 HDAC10Q969S8 669 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 PABPC5Q96DU9 382 aaKnown RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SGF29Q96ES7 293 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 DCUN1D1Q96GG9 259 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SPATA17Q96L03 361 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 UBXN10Q96LJ8 280 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 PPP1R36Q96LQ0 422 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 ZNF599Q96NL3 588 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 KCNC2Q96PR1 638 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 FAM193BQ96PV7 902 aaPredicted RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 TUBGCP5Q96RT8 1024 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 CDK5RAP1Q96SZ6 601 aaKnown RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 NDNQ99608 321 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 OLFM1Q99784 485 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 SLC25A23Q9BV35 468 aa4.91□□□□□ -1.62
SF3B6-202ENST00000478050 POLR1EQ9GZS1 481 aaKnown RBP4.91□□□□□ -1.62
SF3B6-202ENST00000478050 GSTO2Q9H4Y5 243 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms