RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PRRC2AP48634 2157 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 ZCWPW2A0A1B0GU75 182 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 PTGES3LE9PB15 166 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 CLIC2O15247 247 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 KRTAP1-4P0C5Y4 121 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 ALOX12P18054 663 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 POLR2CP19387 275 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 TM4SF1P30408 202 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 MAP2K2P36507 400 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 HADHAP40939 763 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 AMPHP49418 695 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 GOLGA8DPQ0D2H9 430 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 CSTF3Q12996 717 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 OLIG2Q13516 323 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 ENPP2Q13822 863 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 COL28A1Q2UY09 1125 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 KLHL35Q6PF15 583 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 ZNF790Q6PG37 636 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 GSTA5Q7RTV2 222 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 FBXL16Q8N461 479 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 WDTC1Q8N5D0 677 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 ZBTB2Q8N680 514 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 SCFD2Q8WU76 684 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 DNAAF4Q8WXU2 420 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 RSRC1Q96IZ7 334 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 QRFPRQ96P65 431 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 KIF9Q9HAQ2 790 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 GPR108Q9NPR9 543 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 CNOT8Q9UFF9 292 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 VPS28Q9UK41 221 aa2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 MRPS28Q9Y2Q9 187 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-212ENST00000474059 UTYO14607 1347 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 PTPRCP08575 1304 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 FAM237AA0A1B0GTK4 181 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 A0A1W2PRG0 241 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 FRMD3A2A2Y4 597 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 AGAP14A8MT82 685 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 MYO1GB0I1T2 1018 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 SLC22A2O15244 555 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 OR2C1O95371 312 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 HOXB5P09067 269 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 FAM106CPP0CH98 169 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 CEACAM1P13688 526 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 IL7RP16871 459 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 ZNF23P17027 643 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 CDH2P19022 906 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 PPARGP37231 505 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 UBA7P41226 1012 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 GARSP41250 739 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 MC1RQ01726 317 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 CREB5Q02930 508 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 NIPAL4Q0D2K0 466 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 DRAP1Q14919 205 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 TOMM20Q15388 145 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 CXorf66Q5JRM2 361 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 FAAP20Q6NZ36 180 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 C16orf54Q6UWD8 224 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 ZNF704Q6ZNC4 412 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 PLEKHM3Q6ZWE6 761 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 BRINP3Q76B58 766 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 NRROSQ86YC3 692 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 ARHGAP12Q8IWW6 846 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 NME8Q8N427 588 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 FGFBP3Q8TAT2 258 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 SLC38A5Q8WUX1 472 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 GRAMD2BQ96HH9 432 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 CMTM3Q96MX0 182 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 IFIH1Q9BYX4 1025 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 SYNCQ9H7C4 482 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 DLGAP2Q9P1A6 1054 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 ABI3Q9P2A4 366 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 POLG2Q9UHN1 485 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 ZNF215Q9UL58 517 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 AAR2Q9Y312 384 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 CEPT1Q9Y6K0 416 aa2.93□□□□□ -1.94
CCDC88A-212ENST00000474059 VILLO15195 856 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 AHCYL1O43865 530 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 GJB3O75712 270 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 EGFP01133 1207 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 PORP16435 677 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 HOXA13P31271 388 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 ARCN1P48444 511 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 F2RL1P55085 397 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 PRAMEP78395 509 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 SORDQ00796 357 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 CUL4AQ13619 759 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 CRYMQ14894 314 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 DUSP28Q4G0W2 176 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 ASPRV1Q53RT3 343 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 RILPL1Q5EBL4 403 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 ZNF613Q6PF04 617 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 SARM1Q6SZW1 724 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 QSOX2Q6ZRP7 698 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 HAPLN4Q86UW8 402 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 GPR180Q86V85 440 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 RPAP2Q8IXW5 612 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 BEST3Q8N1M1 668 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 RBM15BQ8NDT2 890 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 HUS1BQ8NHY5 278 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 POMGNT1Q8WZA1 660 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms