RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 FTCDO95954 541 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 AMD1P17707 334 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 PBLDP30039 288 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 AKT1P31749 480 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 ADRA1AP35348 466 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 TSPAN7P41732 249 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 ATP1A2P50993 1020 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 RAB15P59190 212 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 DCAF12Q5T6F0 453 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 TMEM220Q6QAJ8 160 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 ABRAXAS1Q6UWZ7 409 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 XKR5Q6UX68 686 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 DET1Q7L5Y6 550 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 PLXDC1Q8IUK5 500 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 TMEM139Q8IV31 216 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 RASGEF1AQ8N9B8 481 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 DDHD1Q8NEL9 900 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 OR4K2Q8NGD2 314 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 SPATA13Q96N96 652 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 CTRCQ99895 268 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 UCK1Q9HA47 277 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 POT1Q9NUX5 634 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 OGFRQ9NZT2 677 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 FKBPLQ9UIM3 349 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 AAR2Q9Y312 384 aaKnown RBP15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 KCTD3Q9Y597 815 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 SLC30A1Q9Y6M5 507 aa15.44■□□□□ 0.06
CCDC88B-205ENST00000472524 MN1Q10571 1320 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 PPFIA2O75334 1257 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 POP7O75817 140 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 MSH3P20585 1137 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 LPOP22079 712 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 HALP42357 657 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 CSRP3P50461 194 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 KIF5AQ12840 1032 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 SPARCL1Q14515 664 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 CLCA4Q14CN2 919 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 TAF1AQ15573 450 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 AGAP9Q5VTM2 703 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 RANBP10Q6VN20 620 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 AMZ2Q86W34 360 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 IL22RA1Q8N6P7 574 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 UBL4BQ8N7F7 174 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 BMPERQ8N8U9 685 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 ZSCAN1Q8NBB4 408 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 ZNF398Q8TD17 642 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 DTX3LQ8TDB6 740 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 NAT14Q8WUY8 206 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 NKD1Q969G9 470 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 TGM7Q96PF1 710 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 TBL1YQ9BQ87 522 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 ASPSCR1Q9BZE9 553 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 PSMD13Q9UNM6 376 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 WDR37Q9Y2I8 494 aa15.43■□□□□ 0.06
CCDC88B-205ENST00000472524 HECTD1Q9ULT8 2610 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 GOLGA6L9A6NEM1 432 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 ARHGAP6O43182 974 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 RAD1O60671 282 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 TMPRSS15P98073 1019 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 MC2RQ01718 297 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 GPR18Q14330 331 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 NFE2L1Q14494 772 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 CEACAM20Q6UY09 585 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 WASH2PQ6VEQ5 465 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 FAM83HQ6ZRV2 1179 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 CACNA2D3Q8IZS8 1091 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 SYCE1Q8N0S2 351 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 TXLNBQ8N3L3 684 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 BEND7Q8N7W2 519 aaPredicted RBP15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 OR13C4Q8NGS5 318 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 GPR150Q8NGU9 434 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 RSC1A1Q92681 617 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 RTP4Q96DX8 246 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 C9orf72Q96LT7 481 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 ASB8Q9H765 288 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 APMAPQ9HDC9 416 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 WASH6PQ9NQA3 447 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 SMOXQ9NWM0 555 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 FAM8A1Q9UBU6 413 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 IL17BQ9UHF5 180 aa15.42■□□□□ 0.06
CCDC88B-205ENST00000472524 C5orf60A6NFR6 353 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 MIF4GDA9UHW6 222 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 TERTO14746 1132 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 CAPN5O15484 640 aaPredicted RBP15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 DDX3YO15523 660 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 SUV39H1O43463 412 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 KCNJ13O60928 360 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 SRP72O76094 671 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 CRTAMO95727 393 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 C9P02748 559 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 CDC25BP30305 580 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 LEPRP48357 1165 aaKnown RBP15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 SEPHS1P49903 392 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 DMPKQ09013 629 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 LONRF2Q1L5Z9 754 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 FNBP1LQ5T0N5 605 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 ARHGEF18Q6ZSZ5 1173 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 TTC13Q8NBP0 860 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 LRRC45Q96CN5 670 aa15.41■□□□□ 0.06
CCDC88B-205ENST00000472524 RNF31Q96EP0 1072 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms