RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 MAPRE3Q9UPY8 281 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 TIMM22Q9Y584 194 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ANXA8L1Q5VT79 327 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ERICH5Q6P6B1 374 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 MFSD3Q96ES6 412 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ZNF184Q99676 751 aaPredicted RBP13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 RIOK2Q9BVS4 552 aaKnown RBP13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 C9JVG2 144 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 L7N2F9 121 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 METTL18O95568 372 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 STATHP02808 62 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 GNB3P16520 340 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 VAMP2P63027 116 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ILF3Q12906 894 aaKnown RBP eCLIP13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 MTX3Q5HYI7 312 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 C1orf94Q6P1W5 598 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 C8orf48Q96LL4 319 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 DHRS12A0PJE2 317 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 AP5Z1O43299 807 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ZNF16P17020 682 aaPredicted RBP13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ADSSP30520 456 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 CDKL4Q5MAI5 379 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ZCCHC12Q6PEW1 402 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 FBXW8Q8N3Y1 598 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 GTPBP3Q969Y2 492 aaKnown RBP13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 TBX5Q99593 518 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 HEPHQ9BQS7 1158 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 RIOX1Q9H6W3 641 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 SEC61A2Q9H9S3 476 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 DGKBQ9Y6T7 804 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 MAPTP10636 758 aaKnown RBP13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 HNF1BP35680 557 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 FOXRED2Q8IWF2 684 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 OR4C6Q8NH72 309 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 NIFKQ9BYG3 293 aaKnown RBP13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 CHIAQ9BZP6 476 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 SRMSQ9H3Y6 488 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 GMEB1Q9Y692 573 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 AP1M2Q9Y6Q5 423 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 GLYATL1P3A0A0U1RQE8 302 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 M0R129 80 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 GLRA2P23416 452 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 RGS21Q2M5E4 152 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 THAP5Q7Z6K1 395 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 CMC1Q7Z7K0 106 aa13.12□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 RIIAD1A6NNX1 92 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 GSC2O15499 205 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 RPL17P18621 184 aaKnown RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 CASP5P51878 434 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 TIGD2Q4W5G0 525 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 Q8N9G6 341 aaPredicted RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 OR10H4Q8NGA5 316 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 PCDH19Q8TAB3 1148 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 RCN3Q96D15 328 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 TMEM121BQ9BXQ6 578 aaPredicted RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 C11orf16Q9NQ32 467 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 NEXMIFQ5QGS0 1516 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 KLRG2A4D1S0 409 aaPredicted RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 TLX3O43711 291 aaPredicted RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ERCC1P07992 297 aaPredicted RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 SLC35G6P0C7Q6 338 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 PPP3CAQ08209 521 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 LIPMQ5VYY2 423 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ZCCHC9Q8N567 271 aaKnown RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 FBXO22Q8NEZ5 403 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ANKRD7Q92527 254 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 PRMT8Q9NR22 394 aaPredicted RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 PCDHAC2Q9Y5I4 1007 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 KHNYNO15037 678 aaKnown RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 SLC22A3O75751 556 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 NFATC1O95644 943 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 MT-CYBP00156 380 aaPredicted RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 SHBGP04278 402 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 RABGGTBP53611 331 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 GALNT18Q6P9A2 607 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ANKRD52Q8NB46 1076 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ZNF398Q8TD17 642 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 CLCA3PQ9Y6N3 262 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 SALL1Q9NSC2 1324 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ALKQ9UM73 1620 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 SMAD9O15198 467 aaKnown RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 CHADO15335 359 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 NR4A1P22736 598 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 GLUD2P49448 558 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 SEPHS1P49903 392 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ADAM8P78325 824 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 SPIN3Q5JUX0 258 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ATXN7L2Q5T6C5 722 aaPredicted RBP13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 TMPRSS11AQ6ZMR5 421 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 HFE2Q6ZVN8 426 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 TMEM161BQ8NDZ6 487 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 HEXDCQ8WVB3 486 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 CACNG4Q9UBN1 327 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ZMYM2Q9UBW7 1377 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 GCNT1Q02742 428 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ABCA11PQ4W5N1 156 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 TXNDC11Q6PKC3 985 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 UNC5BQ8IZJ1 945 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 BSNDQ8WZ55 320 aa13.11□□□□□ -0.31
NPHP3-ACAD11-201ENST00000471702 ACO2Q99798 780 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms