RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 IPMKQ8NFU5 416 aa17.15■□□□□ 0.34
COL7A1-208ENST00000470076 C9orf43Q8TAL5 461 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-208ENST00000470076 QKIQ96PU8 341 aaKnown RBP eCLIP17.15■□□□□ 0.34
COL7A1-208ENST00000470076 WDR37Q9Y2I8 494 aa17.15■□□□□ 0.34
COL7A1-208ENST00000470076 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.15■□□□□ 0.34
COL7A1-208ENST00000470076 NBASA2RRP1 2371 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 GOLGA6L3A6NEY3 463 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 KIF1CO43896 1103 aaKnown RBP17.14■□□□□ 0.33
COL7A1-208ENST00000470076 UGT1A9O60656 530 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 POP7O75817 140 aaKnown RBP17.14■□□□□ 0.33
COL7A1-208ENST00000470076 NDUFA10O95299 355 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 FGF5P12034 268 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 NELFEP18615 380 aaKnown RBP17.14■□□□□ 0.33
COL7A1-208ENST00000470076 UGT1A6P19224 532 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 UGT1A1P22309 533 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 UGT1A4P22310 534 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 FECHP22830 423 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 DLSTP36957 453 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 TLE1Q04724 770 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 TBX2Q13207 712 aaPredicted RBP17.14■□□□□ 0.33
COL7A1-208ENST00000470076 DEFB109BQ30KR1 87 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 GPRC6AQ5T6X5 926 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 IRGCQ6NXR0 463 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 C16orf46Q6P387 395 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 FAM92BQ6ZTR7 304 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 CCDC50Q8IVM0 306 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 HAUS1Q96CS2 278 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 STAMBPL1Q96FJ0 436 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 RBM41Q96IZ5 413 aaKnown RBP17.14■□□□□ 0.33
COL7A1-208ENST00000470076 ZNF514Q96K75 400 aaPredicted RBP17.14■□□□□ 0.33
COL7A1-208ENST00000470076 FSD1LQ9BXM9 530 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 GOLPH3Q9H4A6 298 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 UGT1A7Q9HAW7 530 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 UGT1A10Q9HAW8 530 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 UGT1A8Q9HAW9 530 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 SMOXQ9NWM0 555 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 RSPH14Q9UHP6 348 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 PCDHB3Q9Y5E6 796 aa17.14■□□□□ 0.33
COL7A1-208ENST00000470076 F5H423 210 aaPredicted RBP17.13■□□□□ 0.33
COL7A1-208ENST00000470076 ARHGAP6O43182 974 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 KIAA0754O94854 1291 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 CTSCP53634 463 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 XRCC4Q13426 336 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 SEPT6Q14141 434 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 RPE65Q16518 533 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 LONRF2Q1L5Z9 754 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.13■□□□□ 0.33
COL7A1-208ENST00000470076 TMEM220Q6QAJ8 160 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 BBS12Q6ZW61 710 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 PPP1R3BQ86XI6 285 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 GALNT6Q8NCL4 622 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 RNF214Q8ND24 703 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 UBXN4Q92575 508 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 SEMA5BQ9P283 1151 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 LNPEPQ9UIQ6 1025 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 ANAPC2Q9UJX6 822 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 KCND3Q9UK17 655 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 CROTQ9UKG9 612 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 KCTD3Q9Y597 815 aa17.13■□□□□ 0.33
COL7A1-208ENST00000470076 COL12A1Q99715 3063 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 KLHL33A6NCF5 533 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 OR2AG2A6NM03 316 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 APOC4-APOC2K7ER74 178 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 GAPDHSO14556 408 aaPredicted RBP17.12■□□□□ 0.33
COL7A1-208ENST00000470076 STX7O15400 261 aaKnown RBP17.12■□□□□ 0.33
COL7A1-208ENST00000470076 GPR39O43194 453 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 BUD23O43709 281 aaKnown RBP17.12■□□□□ 0.33
COL7A1-208ENST00000470076 SPAG6O75602 509 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 ANXA9O76027 345 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 LCA5LO95447 670 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 APOC2P02655 101 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 MT-ND3P03897 115 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 CCNYL3P0C7X3 344 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 F8A1P23610 371 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 MARCKSL1P49006 195 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 METRNLQ641Q3 311 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 C11orf63Q6NUN7 778 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 GPR150Q8NGU9 434 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 ZNF398Q8TD17 642 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 ELMO2Q96JJ3 720 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 SLC41A2Q96JW4 573 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 FERMT1Q9BQL6 677 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 GBA3Q9H227 469 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 PDE7BQ9NP56 450 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 LUC7LQ9NQ29 371 aaKnown RBP17.12■□□□□ 0.33
COL7A1-208ENST00000470076 PSMD13Q9UNM6 376 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 MRPS18BQ9Y676 258 aaKnown RBP17.12■□□□□ 0.33
COL7A1-208ENST00000470076 NAV2Q8IVL1 2488 aa17.12■□□□□ 0.33
COL7A1-208ENST00000470076 MSH3P20585 1137 aa17.11■□□□□ 0.33
COL7A1-208ENST00000470076 AKT1P31749 480 aa17.11■□□□□ 0.33
COL7A1-208ENST00000470076 CASRP41180 1078 aa17.11■□□□□ 0.33
COL7A1-208ENST00000470076 GEMP55040 296 aa17.11■□□□□ 0.33
COL7A1-208ENST00000470076 NFE2L1Q14494 772 aa17.11■□□□□ 0.33
COL7A1-208ENST00000470076 PLCL1Q15111 1095 aa17.11■□□□□ 0.33
COL7A1-208ENST00000470076 ATP1A1-AS1Q5TC04 95 aa17.11■□□□□ 0.33
COL7A1-208ENST00000470076 ITPRIPL1Q6GPH6 555 aa17.11■□□□□ 0.33
COL7A1-208ENST00000470076 FAM83HQ6ZRV2 1179 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-208ENST00000470076 BPHLQ86WA6 291 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-208ENST00000470076 BEND7Q8N7W2 519 aaPredicted RBP17.11■□□□□ 0.33
COL7A1-208ENST00000470076 SIDT2Q8NBJ9 832 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms