RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 GPR39O43194 453 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 BUD23O43709 281 aaKnown RBP16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 POP7O75817 140 aaKnown RBP16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 ANXA9O76027 345 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 RBL1P28749 1068 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 CTNNA1P35221 906 aaKnown RBP16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 LEPRP48357 1165 aaKnown RBP16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 CTSCP53634 463 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 CCDC181Q5TID7 509 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 PRSS42Q7Z5A4 293 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 CALR3Q96L12 384 aaKnown RBP16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 FERMT1Q9BQL6 677 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 RAB33BQ9H082 229 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 SMOXQ9NWM0 555 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 EPHA6Q9UF33 1036 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 EFR3BQ9Y2G0 817 aa16.26■□□□□ 0.19
CCDC28B-204ENST00000469003 STX7O15400 261 aaKnown RBP16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 RASSF9O75901 435 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 AGTP01019 485 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 CA5AP35218 305 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 SEPHS1P49903 392 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 FOXM1Q08050 763 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 GPRC6AQ5T6X5 926 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 ITPRIPL1Q6GPH6 555 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 TMEM220Q6QAJ8 160 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 ESX1Q8N693 406 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 ZDHHC12Q96GR4 267 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 GORASP1Q9BQQ3 440 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 FICDQ9BVA6 458 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 SLC25A18Q9H1K4 315 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 C10orf88Q9H8K7 445 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 PCDHA3Q9Y5H8 950 aa16.25■□□□□ 0.19
CCDC28B-204ENST00000469003 OR2AG2A6NM03 316 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 NKX2-8O15522 239 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 LPOP22079 712 aaPredicted RBP16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 PTPN7P35236 360 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 STAT5AP42229 794 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 CCR10P46092 362 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 NFKB2Q00653 900 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 OTUD4Q01804 1114 aaKnown RBP16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 CDC20Q12834 499 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 IL11RAQ14626 422 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 PTPRCAPQ14761 206 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 TAF1AQ15573 450 aaPredicted RBP16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 RPE65Q16518 533 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 CACHD1Q5VU97 1274 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 RANBP10Q6VN20 620 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 FAM83HQ6ZRV2 1179 aaPredicted RBP16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 CDKL3Q8IVW4 592 aaPredicted RBP16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 UNC5BQ8IZJ1 945 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 ACTL9Q8TC94 416 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 ZNF398Q8TD17 642 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 KLHL6Q8WZ60 621 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 ZNF514Q96K75 400 aaPredicted RBP16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 PANX2Q96RD6 677 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 ULBP3Q9BZM4 244 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 IL17BQ9UHF5 180 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 TUBD1Q9UJT1 453 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 ARL5AQ9Y689 179 aa16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 EPN1Q9Y6I3 576 aaPredicted RBP16.24■□□□□ 0.19
CCDC28B-204ENST00000469003 RCCD1A6NED2 376 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 C2orf81A6NN90 581 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 PJA2O43164 708 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 SUV39H1O43463 412 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 KIF1CO43896 1103 aaKnown RBP16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 NDUFA10O95299 355 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 PRAMEF1O95521 474 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 MSH3P20585 1137 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 FECHP22830 423 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 ADRA1AP35348 466 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 CSRP3P50461 194 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 POLE2P56282 527 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 SH3BP2P78314 561 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 MC1RQ01726 317 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 KCNAB2Q13303 367 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 NFE2L1Q14494 772 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 LONRF2Q1L5Z9 754 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 CRTC2Q53ET0 693 aaPredicted RBP16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 ANKRD20A2Q5SQ80 823 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 ANKRD20A1Q5TYW2 823 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 ANKRD20A3Q5VUR7 823 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 IRGCQ6NXR0 463 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 ATG14Q6ZNE5 492 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 FAM92BQ6ZTR7 304 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 GPR150Q8NGU9 434 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 OR6C1Q96RD1 312 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 OSBPL8Q9BZF1 889 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 SEMA5BQ9P283 1151 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 PSMD13Q9UNM6 376 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 AAR2Q9Y312 384 aaKnown RBP16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 RPS6KL1Q9Y6S9 549 aa16.23■□□□□ 0.19
CCDC28B-204ENST00000469003 MACROD2A1Z1Q3 448 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 CCDC66A2RUB6 948 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 KLHL33A6NCF5 533 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 C5orf60A6NFR6 353 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 SOWAHDA6NJG2 315 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 BTNL10A8MVZ5 291 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 TERTO14746 1132 aaKnown RBP16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 PRKAR1AP10644 381 aa16.22■□□□□ 0.19
CCDC28B-204ENST00000469003 RBP3P10745 1247 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms