RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 RHDQ02161 417 aa17.78■□□□□ 0.44
SQSTM1-204ENST00000453046 PRPSAP1Q14558 356 aa17.78■□□□□ 0.44
SQSTM1-204ENST00000453046 TMEM164Q5U3C3 297 aa17.78■□□□□ 0.44
SQSTM1-204ENST00000453046 NKAIN2Q5VXU1 208 aa17.78■□□□□ 0.44
SQSTM1-204ENST00000453046 RCBTB1Q8NDN9 531 aa17.78■□□□□ 0.44
SQSTM1-204ENST00000453046 FCRL5Q96RD9 977 aa17.78■□□□□ 0.44
SQSTM1-204ENST00000453046 CCNL2Q96S94 520 aaPredicted RBP17.78■□□□□ 0.44
SQSTM1-204ENST00000453046 SLC38A3Q99624 504 aa17.78■□□□□ 0.44
SQSTM1-204ENST00000453046 ZSCAN5AQ9BUG6 496 aa17.78■□□□□ 0.44
SQSTM1-204ENST00000453046 KCNK6Q9Y257 313 aa17.78■□□□□ 0.44
SQSTM1-204ENST00000453046 ZNF711Q9Y462 761 aa17.78■□□□□ 0.44
SQSTM1-204ENST00000453046 IGHV1OR21-1A0A087WYE8 117 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 E7EVH7 732 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 GRID2O43424 1007 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 SNX2O60749 519 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 NDST3O95803 873 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 PRB1P04280 392 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 ETV5P41161 510 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 GPLD1P80108 840 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 C19orf57Q0VDD7 668 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 C16orf72Q14CZ0 275 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 SLC14A2Q15849 920 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 ANKRD22Q5VYY1 191 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 TMC3Q7Z5M5 1100 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 SFRP1Q8N474 314 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 GPR26Q8NDV2 337 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 MCUQ8NE86 351 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 SLC37A2Q8TED4 501 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 USP7Q93009 1102 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 EID2BQ96D98 161 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 SRPK1Q96SB4 655 aaKnown RBP17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 OR2AG1Q9H205 316 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 ARFGAP3Q9NP61 516 aa17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 PCYT1BQ9Y5K3 369 aaPredicted RBP17.77■□□□□ 0.44
SQSTM1-204ENST00000453046 MGAQ8IWI9 3026 aa17.77■□□□□ 0.43
SQSTM1-204ENST00000453046 PRAMEF33A0A0G2JMD5 474 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 IGHV5-10-1A0A0J9YXX1 117 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 K7ENP7 123 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 HGSO14964 777 aaPredicted RBP17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 PSMD3O43242 534 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 NUAK1O60285 661 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 PRAMEF10O60809 474 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 ANXA9O76027 345 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 AP2A1O95782 977 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 APRTP07741 180 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 LIPCP11150 499 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 SLC2A4P14672 509 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 FASLGP48023 281 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 LIMK2P53671 638 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 HHEXQ03014 270 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 TRA2AQ13595 282 aaKnown RBP eCLIP17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 INO80CQ6PI98 192 aaPredicted RBP17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 ZNF574Q6ZN55 896 aaPredicted RBP17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 SLC9B2Q86UD5 537 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 ZNF761Q86XN6 746 aaPredicted RBP17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 PHYKPLQ8IUZ5 450 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 TAB3Q8N5C8 712 aaPredicted RBP17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 TRAM1L1Q8N609 369 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 OR4D9Q8NGE8 314 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 OR10G6Q8NH81 332 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 TADA1Q96BN2 335 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 CCDC74BQ96LY2 380 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 DPYSL5Q9BPU6 564 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 GORASP1Q9BQQ3 440 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 ATXN10Q9UBB4 475 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 TBC1D29Q9UFV1 150 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 FAM153AQ9UHL3 310 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 ACSL6Q9UKU0 697 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 SSUH2Q9Y2M2 353 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 AAR2Q9Y312 384 aaKnown RBP17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 PCDHB11Q9Y5F2 797 aa17.76■□□□□ 0.43
SQSTM1-204ENST00000453046 BAHCC1Q9P281 2608 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 EIF3HO15372 352 aaKnown RBP eCLIP17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 PPFIA2O75334 1257 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 EML2O95834 649 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 ZNF8P17098 575 aaPredicted RBP17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 MPSTP25325 297 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 CSTF2P33240 577 aaKnown RBP eCLIP17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 LMAN1P49257 510 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 GEMP55040 296 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 DCDC1P59894 354 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 SARNPP82979 210 aaKnown RBP17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 NFATC2Q13469 925 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 SLMAPQ14BN4 828 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 TGIF1Q15583 401 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 HIF1AQ16665 826 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 BEND6Q5SZJ8 279 aaPredicted RBP17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 ZNF648Q5T619 568 aaPredicted RBP17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 PDPK2PQ6A1A2 396 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 MREGQ8N565 214 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 SH3KBP1Q96B97 665 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 OSGEPL1Q9H4B0 414 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 LRRC40Q9H9A6 602 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 TRIM39Q9HCM9 518 aa17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 XAB2Q9HCS7 855 aaKnown RBP17.75■□□□□ 0.43
SQSTM1-204ENST00000453046 AHCTF1Q8WYP5 2266 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 TCRBV7S3A2A0A539 114 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 F5H423 210 aaPredicted RBP17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 DUX1O43812 170 aa17.74■□□□□ 0.43
SQSTM1-204ENST00000453046 SUN1O94901 812 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms