RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SLC2A11Q9BYW1 496 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 SPAG4Q9NPE6 437 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 PAPSS2O95340 614 aaPredicted RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 UROSP10746 265 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ATP1B2P14415 290 aaPredicted RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 ATP6V1C1P21283 382 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 GLDCP23378 1020 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 CMPK1P30085 196 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 CSTF3Q12996 717 aaKnown RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 MED27Q6P2C8 311 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 PPCDCQ96CD2 204 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 CLIP3Q96DZ5 547 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 MRGPRX2Q96LB1 330 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 NECTIN4Q96NY8 510 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 HBEGFQ99075 208 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 MRM3Q9HC36 420 aaKnown RBP7.32□□□□□ -1.24
SYNE1-213ENST00000448038 SLCO3A1Q9UIG8 710 aa7.32□□□□□ -1.24
SYNE1-213ENST00000448038 A0A0J9YYE9 177 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 NEMP2A6NFY4 417 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 GRXCR1A8MXD5 290 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 RFXANKO14593 260 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 DEAF1O75398 565 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 LDLRP01130 860 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 UBTFL6P0CB48 400 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 RUNX3Q13761 415 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 TIGD2Q4W5G0 525 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 RBM20Q5T481 1227 aaKnown RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 TTC33Q6PID6 262 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 APCDD1Q8J025 514 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 OR6Y1Q8NGX8 325 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 GLMNQ92990 594 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 DACH2Q96NX9 599 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 TBC1D10AQ9BXI6 508 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 KLHL4Q9C0H6 718 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 NDEL1Q9GZM8 345 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 PRRC2BQ5JSZ5 2229 aaKnown RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ADAMTSL1Q8N6G6 1762 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 COL4A5P29400 1685 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 FANCGO15287 622 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 FAM189A1O60320 539 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 NPHS1O60500 1241 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 CAPN1P07384 714 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ACADSP16219 412 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 SLC16A1P53985 500 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 KPNB1Q14974 876 aaKnown RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ZNF805Q5CZA5 627 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 OTUD3Q5T2D3 398 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 INTS11Q5TA45 600 aaKnown RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 IRAK1BP1Q5VVH5 260 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ZFP1Q6P2D0 407 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 Q6ZVL8 140 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 PAQR9Q6ZVX9 377 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 RTN4RL1Q86UN2 441 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 PIM3Q86V86 326 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 KRT73Q86Y46 540 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 CILP2Q8IUL8 1156 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 GPR135Q8IZ08 494 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 BHLHE22Q8NFJ8 381 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 SORCS1Q8WY21 1168 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 PROX1Q92786 737 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 CDCA3Q99618 268 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 NMUR2Q9GZQ4 415 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ADAM7Q9H2U9 754 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 NLE1Q9NVX2 485 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 KAT7O95251 611 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ATP6V1G2O95670 118 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 CDH3P22223 829 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 PRKCHP24723 683 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 STC1P52823 247 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 RAD23AP54725 363 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 MRPS22P82650 360 aaKnown RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 LAPTM5Q13571 262 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 PWP1Q13610 501 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 LRRC32Q14392 662 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 XKR4Q5GH76 650 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ANO7Q6IWH7 933 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 BHLHB9Q6PI77 547 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ANKRD33Q7Z3H0 272 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 FBXO30Q8TB52 745 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ITCHQ96J02 903 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 GPR22Q99680 433 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 HERPUD2Q9BSE4 406 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 CCM2Q9BSQ5 444 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 CCDC28BQ9BUN5 200 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 VPS4AQ9UN37 437 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 PIPSLA2A3N6 862 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 FAM47E-STBD1D6RA91 191 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 K7ERQ8 282 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 KLF8O95600 359 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ADH1BP00325 375 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 GSRP00390 522 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 OCM2P0CE71 109 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 OCMP0CE72 109 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 CCNFP41002 786 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 CENPAP49450 140 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 FAM189BP81408 668 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 KLF10Q13118 480 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 SIX1Q15475 284 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ZC3H12BQ5HYM0 836 aaKnown RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 RAB41Q5JT25 222 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms