RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 NPIPB15A6NHN6 443 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-208ENST00000437607 TOR1BO14657 336 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 STX7O15400 261 aaKnown RBP12.02□□□□□ -0.49
PTPRF-208ENST00000437607 NOBOXO60393 691 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 NUDT17P0C025 328 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 ZNF30P17039 623 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 SSTR1P30872 391 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 VIPR1P32241 457 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 UGT1A5P35504 534 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 MMP12P39900 470 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 SUOXP51687 545 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 ZNF140P52738 457 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-208ENST00000437607 HK3P52790 923 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 PRAMEP78395 509 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 CCL7P80098 99 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 UGP2Q16851 508 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 LONRF1Q17RB8 773 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 WSCD2Q2TBF2 565 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 ANKRD20A4Q4UJ75 823 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 KIAA0930Q6ICG6 404 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-208ENST00000437607 ESRP1Q6NXG1 681 aaKnown RBP12.02□□□□□ -0.49
PTPRF-208ENST00000437607 SDR16C5Q8N3Y7 309 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 OTUD6BQ8N6M0 293 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 ARL10Q8N8L6 244 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 EXD3Q8N9H8 876 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 GABPB2Q8TAK5 448 aaPredicted RBP12.02□□□□□ -0.49
PTPRF-208ENST00000437607 CXorf40AQ8TE69 158 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 STYXQ8WUJ0 223 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 CDKL2Q92772 493 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 PEX13Q92968 403 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 CCDC74AQ96AQ1 378 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 DNAJC1Q96KC8 554 aaKnown RBP12.02□□□□□ -0.49
PTPRF-208ENST00000437607 LYSMD1Q96S90 227 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 CCDC77Q9BR77 488 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 TRIM56Q9BRZ2 755 aaKnown RBP12.02□□□□□ -0.49
PTPRF-208ENST00000437607 PCDH12Q9NPG4 1184 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 PPANQ9NQ55 473 aaKnown RBP12.02□□□□□ -0.49
PTPRF-208ENST00000437607 CHRAC1Q9NRG0 131 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 GULP1Q9UBP9 304 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 RIMKLBQ9ULI2 386 aa12.02□□□□□ -0.49
PTPRF-208ENST00000437607 SPENQ96T58 3664 aaKnown RBP12.02□□□□□ -0.49
PTPRF-208ENST00000437607 TCRBV9S1A1TA0A576 114 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 D6RAR5 112 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 PLD2O14939 933 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 ELFN1P0C7U0 828 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 HGFP14210 728 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 LPOP22079 712 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-208ENST00000437607 NMBRP28336 390 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 SLC5A2P31639 672 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 EIF3BP55884 814 aaKnown RBP12.01□□□□□ -0.49
PTPRF-208ENST00000437607 GPX6P59796 221 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 NAB1Q13506 487 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 SLC29A2Q14542 456 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 LRRC14Q15048 493 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 TGIF1Q15583 401 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 SKIDA1Q1XH10 827 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 LINC00303Q3SY05 128 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 UBAP2Q5T6F2 1119 aaKnown RBP12.01□□□□□ -0.49
PTPRF-208ENST00000437607 LRRC66Q68CR7 880 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 PDPK2PQ6A1A2 396 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 LVRNQ6Q4G3 990 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 AFTPHQ6ULP2 937 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 CES3Q6UWW8 571 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 C3orf62Q6ZUJ4 267 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 DPPA4Q7L190 304 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 TMEM135Q86UB9 458 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 KCNMB4Q86W47 210 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 HID1Q8IV36 788 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 SFTPA2Q8IWL1 248 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 FSTL5Q8N475 847 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-208ENST00000437607 TTC30BQ8N4P2 665 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 FBF1Q8TES7 1133 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 FUBP1Q96AE4 644 aaKnown RBP12.01□□□□□ -0.49
PTPRF-208ENST00000437607 MFSD3Q96ES6 412 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 SCRN2Q96FV2 425 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 CERS2Q96G23 380 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 CCNL2Q96S94 520 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-208ENST00000437607 FAM167BQ9BTA0 163 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 APOOQ9BUR5 198 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 EPB41L4BQ9H329 900 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 ACSS3Q9H6R3 686 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 VIPAS39Q9H9C1 493 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 ZFYVE1Q9HBF4 777 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 TREX1Q9NSU2 369 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 C20orf96Q9NUD7 363 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-208ENST00000437607 ZFATQ9P243 1243 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 ATXN7L1Q9ULK2 861 aaPredicted RBP12.01□□□□□ -0.49
PTPRF-208ENST00000437607 PPIL1Q9Y3C6 166 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 PCDHGA7Q9Y5G6 932 aa12.01□□□□□ -0.49
PTPRF-208ENST00000437607 DOPEY2Q9Y3R5 2298 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 ZCWPW2A0A1B0GU75 182 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 MROH6A6NGR9 719 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 GOLGA6L10A6NI86 522 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 LDB2O43679 373 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 BUD23O43709 281 aaKnown RBP12□□□□□ -0.49
PTPRF-208ENST00000437607 HADHAP40939 763 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 TMPRSS15P98073 1019 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 MGAT5Q09328 741 aa12□□□□□ -0.49
PTPRF-208ENST00000437607 MSLNQ13421 630 aaPredicted RBP12□□□□□ -0.49
PTPRF-208ENST00000437607 THOC5Q13769 683 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms