RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 C2orf40Q9H1Z8 148 aa4.12□□□□□ -1.75
HMGB3-203ENST00000430118 PORCNQ9H237 461 aa4.12□□□□□ -1.75
HMGB3-203ENST00000430118 MAGEE1Q9HCI5 957 aa4.12□□□□□ -1.75
HMGB3-203ENST00000430118 ZNF304Q9HCX3 659 aa4.12□□□□□ -1.75
HMGB3-203ENST00000430118 SH3BP4Q9P0V3 963 aa4.12□□□□□ -1.75
HMGB3-203ENST00000430118 CNOT8Q9UFF9 292 aaKnown RBP4.12□□□□□ -1.75
HMGB3-203ENST00000430118 NDRG3Q9UGV2 375 aa4.12□□□□□ -1.75
HMGB3-203ENST00000430118 ANAPC5Q9UJX4 755 aa4.12□□□□□ -1.75
HMGB3-203ENST00000430118 FBXW11Q9UKB1 542 aa4.12□□□□□ -1.75
HMGB3-203ENST00000430118 WBP11Q9Y2W2 641 aaKnown RBP4.12□□□□□ -1.75
HMGB3-203ENST00000430118 RLFQ13129 1914 aa4.12□□□□□ -1.75
HMGB3-203ENST00000430118 SALL1Q9NSC2 1324 aa4.12□□□□□ -1.75
HMGB3-203ENST00000430118 RFX7Q2KHR2 1363 aa4.12□□□□□ -1.75
HMGB3-203ENST00000430118 PLXNB2O15031 1838 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 BDP1A6H8Y1 2624 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 A0A1W2PR77 199 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 LNP1A1A4G5 178 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 SLC22A23A1A5C7 686 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 TMEM191CA6NGB0 347 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 A6NL46 340 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 CCDC188H7C350 402 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 ADAMDEC1O15204 470 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 PRPF4O43172 522 aaKnown RBP eCLIP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 ZC3H11AO75152 810 aaKnown RBP eCLIP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 GPC4O75487 556 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 RECQL5O94762 991 aaPredicted RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 TOP3BO95985 862 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 FYNP06241 537 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 ETFAP13804 333 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 DDX5P17844 614 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 ITGAXP20702 1163 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 OAS2P29728 719 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 GP5P40197 560 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 BTDP43251 543 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 TNNT3P45378 269 aaPredicted RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 CD151P48509 253 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 ARSEP51690 589 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 GSTO1P78417 241 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 PMPCAQ10713 525 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 GRIK3Q13003 919 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 KCNC3Q14003 757 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 PGM5Q15124 567 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 COL28A1Q2UY09 1125 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 SPATS1Q496A3 300 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 DCAF6Q58WW2 860 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 ODF2Q5BJF6 829 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 ZNF362Q5T0B9 420 aaPredicted RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 HECTD2Q5U5R9 776 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 FBXO42Q6P3S6 717 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 LCTLQ6UWM7 567 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 RBPMS2Q6ZRY4 209 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 PLPPR4Q7Z2D5 763 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 TDRPQ86YL5 185 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 MAML2Q8IZL2 1156 aaPredicted RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 MMP21Q8N119 569 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 TTC30BQ8N4P2 665 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 SLC25A41Q8N5S1 370 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 XXYLT1Q8NBI6 393 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 GJC3Q8NFK1 279 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 TSPAN14Q8NG11 270 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 ANKRD7Q92527 254 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 RRNAD1Q96FB5 475 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 CEP295NLQ96MC4 621 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 JAKMIP1Q96N16 626 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 DACH2Q96NX9 599 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 SRSF8Q9BRL6 282 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 SLC25A23Q9BV35 468 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 CCDC106Q9BWC9 280 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 C1QTNF5Q9BXJ0 243 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 SEZ6LQ9BYH1 1024 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 KRTAP4-11Q9BYQ6 195 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 MMP27Q9H306 513 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 RETREG1Q9H6L5 497 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 MAGIXQ9H6Y5 334 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 UPF2Q9HAU5 1272 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 MOV10Q9HCE1 1003 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 XAB2Q9HCS7 855 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 MLXIPLQ9NP71 852 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 PNRC2Q9NPJ4 139 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 MRGBPQ9NV56 204 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 GDE1Q9NZC3 331 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 TUBE1Q9UJT0 475 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 ERVK-11Q9UQG0 969 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 LAMP3Q9UQV4 416 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 LSM4Q9Y4Z0 139 aaKnown RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 ZFP37Q9Y6Q3 630 aaPredicted RBP4.11□□□□□ -1.75
HMGB3-203ENST00000430118 A3GALT2U3KPV4 340 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 GAKO14976 1311 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 SALL3Q9BXA9 1300 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 PHIPQ8WWQ0 1821 aa4.11□□□□□ -1.75
HMGB3-203ENST00000430118 A0A0G2JMZ2 1700 aa4.1□□□□□ -1.75
HMGB3-203ENST00000430118 MUC6Q6W4X9 2439 aa4.1□□□□□ -1.75
HMGB3-203ENST00000430118 ATAD5Q96QE3 1844 aa4.1□□□□□ -1.75
HMGB3-203ENST00000430118 GPR75-ASB3A0A0A6YYF3 556 aa4.1□□□□□ -1.75
HMGB3-203ENST00000430118 KIR2DS5A0A0G2JLQ3 304 aa4.1□□□□□ -1.75
HMGB3-203ENST00000430118 A0A1B0GVM2 712 aa4.1□□□□□ -1.75
HMGB3-203ENST00000430118 DDTLA6NHG4 134 aaPredicted RBP4.1□□□□□ -1.75
HMGB3-203ENST00000430118 F8W810 466 aa4.1□□□□□ -1.75
HMGB3-203ENST00000430118 KIR2DS3K7RE56 304 aa4.1□□□□□ -1.75
HMGB3-203ENST00000430118 RHODO00212 210 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms