RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 TBCELQ5QJ74 424 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 HMBOX1Q6NT76 420 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 HACD2Q6Y1H2 254 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 TAS2R42Q7RTR8 314 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 RIN3Q8TB24 985 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 DNAJB14Q8TBM8 379 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 FUBP1Q96AE4 644 aaKnown RBP10.56□□□□□ -0.72
CUX1-205ENST00000425244 ZNF599Q96NL3 588 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 CDK5RAP1Q96SZ6 601 aaKnown RBP10.56□□□□□ -0.72
CUX1-205ENST00000425244 MRPS26Q9BYN8 205 aaKnown RBP10.56□□□□□ -0.72
CUX1-205ENST00000425244 DERL2Q9GZP9 239 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 POPDC3Q9HBV1 291 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 TRMT6Q9UJA5 497 aaKnown RBP10.56□□□□□ -0.72
CUX1-205ENST00000425244 RAI2Q9Y5P3 530 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 HCFC2Q9Y5Z7 792 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 IRAK3Q9Y616 596 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 COMMD10Q9Y6G5 202 aa10.56□□□□□ -0.72
CUX1-205ENST00000425244 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 BBIP1A8MTZ0 92 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 PDLIM1O00151 329 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 GIPC1O14908 333 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 SNX2O60749 519 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 PLOD1Q02809 727 aaPredicted RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 ZNF177Q13360 481 aaPredicted RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 PABPC1LQ4VXU2 614 aaKnown RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 KRT80Q6KB66 452 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 UGT3A1Q6NUS8 523 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 TMC5Q6UXY8 1006 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 PHYKPLQ8IUZ5 450 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 SLC15A3Q8IY34 581 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 ING5Q8WYH8 240 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 LINGO1Q96FE5 620 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 RPL10LQ96L21 214 aaKnown RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 HGH1Q9BTY7 390 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 TDRD1Q9BXT4 1180 aaKnown RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 CAAP1Q9H8G2 361 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 CD274Q9NZQ7 290 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 EIF2B4Q9UI10 523 aaKnown RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 SYCE1LA8MT33 242 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 IQCF5A8MTL0 148 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 E5RI56 91 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 STX7O15400 261 aaKnown RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 VPS26AO75436 327 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 PRLP01236 227 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 IDO1P14902 403 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 NRIP1P48552 1158 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 CDH4P55283 916 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 ATP6V0D1P61421 351 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 NFYCQ13952 458 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 TAF1AQ15573 450 aaPredicted RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 RABL3Q5HYI8 236 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 C8orf82Q6P1X6 216 aaPredicted RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 GRASPQ7Z6J2 395 aaPredicted RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 SYVN1Q86TM6 617 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 CPNE9Q8IYJ1 553 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 PAF1Q8N7H5 531 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 EEF1AKMT1Q8WVE0 214 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 OVCA2Q8WZ82 227 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 DGCR14Q96DF8 476 aaKnown RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 ZFRQ96KR1 1074 aaKnown RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 TEX37Q96LM6 180 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 CDK15Q96Q40 435 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 HBEGFQ99075 208 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 PIF1Q9H611 641 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 ZNF696Q9H7X3 374 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 SDR39U1Q9NRG7 319 aaPredicted RBP10.55□□□□□ -0.72
CUX1-205ENST00000425244 CMTM6Q9NX76 183 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 PLK2Q9NYY3 685 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 ASB1Q9Y576 335 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 V9GYQ6 96 aa10.55□□□□□ -0.72
CUX1-205ENST00000425244 DHRS12A0PJE2 317 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 FXYD1O00168 92 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 KDELR3O43731 214 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 SNAP91O60641 907 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 CHEK2O96017 543 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 MTHFD1P11586 935 aaKnown RBP10.54□□□□□ -0.72
CUX1-205ENST00000425244 COL6A3P12111 3177 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 PKMP14618 531 aaKnown RBP10.54□□□□□ -0.72
CUX1-205ENST00000425244 LPOP22079 712 aaPredicted RBP10.54□□□□□ -0.72
CUX1-205ENST00000425244 KCNK10P57789 538 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 MYLK3Q32MK0 819 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 RNF219Q5W0B1 726 aaPredicted RBP10.54□□□□□ -0.72
CUX1-205ENST00000425244 CHERPQ8IWX8 916 aaKnown RBP10.54□□□□□ -0.72
CUX1-205ENST00000425244 CDYL2Q8N8U2 506 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 MIPOL1Q8TD10 442 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 NCSTNQ92542 709 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 LRRC58Q96CX6 371 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 MPP4Q96JB8 637 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 ZNF597Q96LX8 424 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 CEP295NLQ96MC4 621 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 BIRC8Q96P09 236 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 HOPXQ9BPY8 73 aaPredicted RBP10.54□□□□□ -0.72
CUX1-205ENST00000425244 GPATCH1Q9BRR8 931 aaKnown RBP10.54□□□□□ -0.72
CUX1-205ENST00000425244 GID8Q9NWU2 228 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 RNF11Q9Y3C5 154 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 EPOPA6NHQ4 379 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 C5orf67F2Z3F1 127 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 H3BNC9 293 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 SOCS2O14508 198 aa10.54□□□□□ -0.72
CUX1-205ENST00000425244 INPP4BO15327 924 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms