RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 PAFAH1B3Q15102 231 aaKnown RBP16.37■□□□□ 0.21
CHCHD3-202ENST00000423635 CCDC122Q5T0U0 273 aa16.37■□□□□ 0.21
CHCHD3-202ENST00000423635 LCN10Q6JVE6 187 aa16.37■□□□□ 0.21
CHCHD3-202ENST00000423635 TMEM126BQ8IUX1 230 aa16.37■□□□□ 0.21
CHCHD3-202ENST00000423635 DSELQ8IZU8 1212 aa16.37■□□□□ 0.21
CHCHD3-202ENST00000423635 CISD2Q8N5K1 135 aaKnown RBP16.37■□□□□ 0.21
CHCHD3-202ENST00000423635 ZBTB2Q8N680 514 aa16.37■□□□□ 0.21
CHCHD3-202ENST00000423635 ENDOVQ8N8Q3 282 aaKnown RBP16.37■□□□□ 0.21
CHCHD3-202ENST00000423635 ADGRE3Q9BY15 652 aa16.37■□□□□ 0.21
CHCHD3-202ENST00000423635 TTLL3Q9Y4R7 772 aa16.37■□□□□ 0.21
CHCHD3-202ENST00000423635 POLEQ07864 2286 aa16.37■□□□□ 0.21
CHCHD3-202ENST00000423635 MFSD11O43934 449 aa16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 MTX2O75431 263 aa16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 CAPN1P07384 714 aa16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 VCLP18206 1134 aa16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 HALP42357 657 aa16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 PIGHQ14442 188 aaPredicted RBP16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 KHDC1Q4VXA5 237 aaKnown RBP16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 ALS2CLQ60I27 953 aa16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 NCBP2-AS2Q69YL0 99 aa16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 CARFQ8N187 725 aa16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 MAGEE1Q9HCI5 957 aa16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 TRIM10Q9UDY6 481 aa16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 B3GNT3Q9Y2A9 372 aa16.36■□□□□ 0.21
CHCHD3-202ENST00000423635 UBA6A0AVT1 1052 aaPredicted RBP16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 HNRNPRO43390 633 aaKnown RBP16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 ZBTB11O95625 1053 aaPredicted RBP16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 MYBL1P10243 752 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 RORAP35398 523 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 SLC25A11Q02978 314 aaKnown RBP16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 DMPKQ09013 629 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 TMEM115Q12893 351 aaPredicted RBP16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 MMRN1Q13201 1228 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 GPR19Q15760 415 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 RPE65Q16518 533 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 DNTTIP2Q5QJE6 756 aaKnown RBP16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 VWA5B1Q5TIE3 1220 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 IGFL3Q6UXB1 125 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 ZNF571Q7Z3V5 609 aaPredicted RBP16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 NIPA2Q8N8Q9 360 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 ANKRD20A12PQ8NF67 263 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 GPR150Q8NGU9 434 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 CPT1BQ92523 772 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 ZNF653Q96CK0 615 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 TRIM11Q96F44 468 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 VPS35Q96QK1 796 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 XPO4Q9C0E2 1151 aaKnown RBP16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 HAUS4Q9H6D7 363 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 TMPRSS11EQ9UL52 423 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 APCP25054 2843 aa16.35■□□□□ 0.21
CHCHD3-202ENST00000423635 OR5K3A6NET4 321 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 DDX3XO00571 662 aaKnown RBP eCLIP16.34■□□□□ 0.214e-12■■■■■ 33.5
CHCHD3-202ENST00000423635 CD48P09326 243 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 PRF1P14222 555 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 CD86P42081 329 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 ARSEP51690 589 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 ELOAQ14241 798 aaKnown RBP16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 KRT81Q14533 505 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 TMTC4Q5T4D3 741 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 APTXQ7Z2E3 356 aaKnown RBP16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 MOCOSQ96EN8 888 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 SGSM3Q96HU1 749 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 TRIB3Q96RU7 358 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 ISCUQ9H1K1 167 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 NUP62CLQ9H1M0 184 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 HRASLS2Q9NWW9 162 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 MYO1AQ9UBC5 1043 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 SHOC2Q9UQ13 582 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 ENTPD4Q9Y227 616 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 BTRCQ9Y297 605 aa16.34■□□□□ 0.21
CHCHD3-202ENST00000423635 BPIP17213 487 aa16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 GALNT3Q14435 633 aa16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 CCDC183Q5T5S1 534 aa16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 PRAMEF17Q5VTA0 474 aa16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 FAM69BQ5VUD6 431 aa16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 BRSK1Q8TDC3 778 aa16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 ZFPM2Q8WW38 1151 aa16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 MARVELD3Q96A59 401 aa16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 PCMTD2Q9NV79 361 aa16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 COPG1Q9Y678 874 aaKnown RBP16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 DNMT3AQ9Y6K1 912 aaPredicted RBP16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 C2CD3Q4AC94 2353 aa16.33■□□□□ 0.2
CHCHD3-202ENST00000423635 SEC16AO15027 2179 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 POLQO75417 2590 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 PRKCIP41743 596 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 CDK18Q07002 472 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 ATP1A4Q13733 1029 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 DPYSL3Q14195 570 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 PLCL1Q15111 1095 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 FAM198BQ6UWH4 519 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 AMZ2Q86W34 360 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 TRAPPC5Q8IUR0 188 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 CNTD1Q8N815 330 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 ST6GALNAC3Q8NDV1 305 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 LRRN4Q8WUT4 740 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 HDAC11Q96DB2 347 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 SYTL2Q9HCH5 934 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 AIPL1Q9NZN9 384 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 ZNF711Q9Y462 761 aa16.32■□□□□ 0.2
CHCHD3-202ENST00000423635 PCSK5Q92824 1860 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms