RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ARHGAP12Q8IWW6 846 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 FAM83FQ8NEG4 500 aaPredicted RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 ATL1Q8WXF7 558 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 PPM1MQ96MI6 270 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 CCDC115Q96NT0 180 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 CAMKK2Q96RR4 588 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 ATOH8Q96SQ7 321 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 UGT2B28Q9BY64 529 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 GORASP2Q9H8Y8 452 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 IL37Q9NZH6 218 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 TBC1D14Q9P2M4 693 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 OPTCQ9UBM4 332 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 NEU3Q9UQ49 428 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 AGAP5A6NIR3 686 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 EIF3FO00303 357 aaPredicted RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 BCKDKO14874 412 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 RAD51BO15315 384 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 MAFKO60675 156 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 GOT2P00505 430 aaKnown RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 CHRNB1P11230 501 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 FDXRP22570 491 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 PRKACGP22612 351 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 PSMB9P28065 219 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 TGFBR2P37173 567 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 ST13P50502 369 aaKnown RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 ZNF135P52742 658 aaPredicted RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 CCNA1P78396 465 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 PPP1R8Q12972 351 aaKnown RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 FADDQ13158 208 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 TNFAIP1Q13829 316 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 COLEC12Q5KU26 742 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 DCAF15Q66K64 600 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 LIMS2Q7Z4I7 341 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 OR2T11Q8NH01 316 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 PABPC5Q96DU9 382 aaKnown RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 GJD4Q96KN9 370 aaPredicted RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 ZNF583Q96ND8 569 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 TMEM209Q96SK2 561 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 ULBP1Q9BZM6 244 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 TKTL2Q9H0I9 626 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 MARCH7Q9H992 704 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 ZNF277Q9NRM2 450 aaPredicted RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 MARCH4Q9P2E8 410 aaPredicted RBP10.58□□□□□ -0.72
USP54-204ENST00000422491 INVSQ9Y283 1065 aa10.58□□□□□ -0.72
USP54-204ENST00000422491 C19orf81C9J6K1 198 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 PIRO00625 290 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 SOCS7O14512 581 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 SLC7A4O43246 635 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 IDH3BO43837 385 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 CYP11A1P05108 521 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 INSRRP14616 1297 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 FMO3P31513 532 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 DCTP40126 519 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 DAOAP59103 153 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 IL5RAQ01344 420 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 ZC3H12BQ5HYM0 836 aaKnown RBP10.57□□□□□ -0.72
USP54-204ENST00000422491 NBPF12Q5TAG4 269 aaPredicted RBP10.57□□□□□ -0.72
USP54-204ENST00000422491 UBE2UQ5VVX9 321 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 RSBN1Q5VWQ0 802 aaPredicted RBP10.57□□□□□ -0.72
USP54-204ENST00000422491 TTC23LQ6PF05 361 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 OSTM1Q86WC4 334 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 PLD3Q8IV08 490 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 RYBPQ8N488 228 aaPredicted RBP10.57□□□□□ -0.72
USP54-204ENST00000422491 ATPAF2Q8N5M1 289 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 RHEBL1Q8TAI7 183 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 FBXO30Q8TB52 745 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 COPS5Q92905 334 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 ITCHQ96J02 903 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 TNIP3Q96KP6 325 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 ZNF599Q96NL3 588 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 RNF38Q9H0F5 515 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 MMP27Q9H306 513 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 KAT8Q9H7Z6 458 aaKnown RBP10.57□□□□□ -0.72
USP54-204ENST00000422491 SEMA4BQ9NPR2 832 aaPredicted RBP10.57□□□□□ -0.72
USP54-204ENST00000422491 RGS18Q9NS28 235 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 PNMA8BQ9ULN7 279 aaPredicted RBP10.57□□□□□ -0.72
USP54-204ENST00000422491 N6AMT1Q9Y5N5 214 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 METTL15A6NJ78 407 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 UNCXA6NJT0 531 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 CLDN24A6NM45 220 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 MATN3O15232 486 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 CCNKO75909 580 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 MT-ND2P03891 347 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 ITGAMP11215 1152 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 PRDX3P30048 256 aaKnown RBP10.57□□□□□ -0.72
USP54-204ENST00000422491 CXCR3P49682 368 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 RABGGTBP53611 331 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 FCGRTP55899 365 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 ERVK-8P63133 956 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 KCTD2Q14681 263 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 ZNF404Q494X3 552 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 CES5AQ6NT32 575 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 ZNF549Q6P9A3 640 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 CCDC81Q6ZN84 652 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 APPL2Q8NEU8 664 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 RHBDF1Q96CC6 855 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 ZHX1-C8orf76Q96EF9 292 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 SLC47A1Q96FL8 570 aa10.57□□□□□ -0.72
USP54-204ENST00000422491 CDK5RAP1Q96SZ6 601 aaKnown RBP10.57□□□□□ -0.72
USP54-204ENST00000422491 RHNO1Q9BSD3 238 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms