RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 VEGFBP49765 207 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 SLC30A9Q6PML9 568 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 CHMP1BQ7LBR1 199 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 PQLC3Q8N755 202 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 OR2T12Q8NG77 320 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 LCN9Q8WX39 176 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 TRAPPC9Q96Q05 1148 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 PSKH2Q96QS6 385 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 GPN3Q9UHW5 284 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-205ENST00000414879 POLR3HQ9Y535 204 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-205ENST00000414879 DHRS12A0PJE2 317 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 TULP2O00295 520 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 PDE5AO76074 875 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 SCELO95171 688 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 DLDP09622 509 aaKnown RBP11.83□□□□□ -0.52
PTPRF-205ENST00000414879 HERVK_113P63132 956 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 RIPK1Q13546 671 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 AAK1Q2M2I8 961 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 VPS26BQ4G0F5 336 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 USP39Q53GS9 565 aaKnown RBP11.83□□□□□ -0.52
PTPRF-205ENST00000414879 UBXN11Q5T124 520 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 GCNT7Q6ZNI0 430 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 DSELQ8IZU8 1212 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 GPR22Q99680 433 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 ERVK-6Q9BXR3 956 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 FAM192AQ9GZU8 254 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 NOL11Q9H8H0 719 aaKnown RBP11.83□□□□□ -0.52
PTPRF-205ENST00000414879 C1orf109Q9NX04 203 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 H3BN98 237 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 PCCBP05166 539 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 CYP2R1Q6VVX0 501 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 CAMKK1Q8N5S9 505 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 PIK3C3Q8NEB9 887 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 RORBQ92753 470 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 OSBPL11Q9BXB4 747 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 GULP1Q9UBP9 304 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 C15orf41Q9Y2V0 281 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 COPG1Q9Y678 874 aaKnown RBP11.83□□□□□ -0.52
PTPRF-205ENST00000414879 CYP7B1O75881 506 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 MPSTP25325 297 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 GJA5P36382 358 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 GRIA3P42263 894 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 KCNQ1P51787 676 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 CHIT1Q13231 466 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 ATXN7L2Q5T6C5 722 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-205ENST00000414879 TAF8Q7Z7C8 310 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 KBTBD6Q86V97 674 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 LRRTM4Q86VH4 590 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 TSTD1Q8NFU3 115 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 SIPA1Q96FS4 1042 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 TBCDQ9BTW9 1192 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 MAGEE1Q9HCI5 957 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-205ENST00000414879 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-205ENST00000414879 STX11O75558 287 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 PIK3CBP42338 1070 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 SLC25A3Q00325 362 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 NR1D2Q14995 579 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 SPATS1Q496A3 300 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 NIPAL1Q6NVV3 410 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 FAM124AQ86V42 546 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 ZNF280BQ86YH2 543 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 DENND1AQ8TEH3 1009 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 MECRQ9BV79 373 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 SLC2A4RGQ9NR83 387 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 CLDND1Q9NY35 253 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 CTSAP10619 480 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 TYRP14679 529 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 BMPR1AP36894 532 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 OTUD3Q5T2D3 398 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-205ENST00000414879 TCEAL8Q8IYN2 117 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 NETO2Q8NC67 525 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 GPR156Q8NFN8 814 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 OR4A15Q8NGL6 344 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 WRAP53Q9BUR4 548 aaKnown RBP11.82□□□□□ -0.52
PTPRF-205ENST00000414879 NLE1Q9NVX2 485 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-205ENST00000414879 TMED5Q9Y3A6 229 aa11.82□□□□□ -0.52
PTPRF-205ENST00000414879 TULP3O75386 442 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 GPIP06744 558 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 CFHP08603 1231 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 MRPS22P82650 360 aaKnown RBP11.81□□□□□ -0.52
PTPRF-205ENST00000414879 KLF1Q13351 362 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-205ENST00000414879 PITRM1Q5JRX3 1037 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 PLEKHM3Q6ZWE6 761 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 CPNE9Q8IYJ1 553 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 ADCY4Q8NFM4 1077 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 DNAJB14Q8TBM8 379 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 PHF10Q8WUB8 498 aaKnown RBP11.81□□□□□ -0.52
PTPRF-205ENST00000414879 IL12RB2Q99665 862 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 OXSMQ9NWU1 459 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 ZDHHC7Q9NXF8 308 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 TNRC6CQ9HCJ0 1690 aaKnown RBP11.81□□□□□ -0.52
PTPRF-205ENST00000414879 PEX1O43933 1283 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 ATP6V1B1P15313 513 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 CCNHP51946 323 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-205ENST00000414879 PLEKHG6Q3KR16 790 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 GPAT3Q53EU6 434 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 XKR4Q5GH76 650 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 PM20D1Q6GTS8 502 aa11.81□□□□□ -0.52
PTPRF-205ENST00000414879 OR10G6Q8NH81 332 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms