RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 ZNF773Q6PK81 442 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 LRRC58Q96CX6 371 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 ZHX1-C8orf76Q96EF9 292 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 COLEC11Q9BWP8 271 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 EXOSC4Q9NPD3 245 aaKnown RBP12.82□□□□□ -0.36
PTPRN-202ENST00000409251 IPO11Q9UI26 975 aaKnown RBP12.82□□□□□ -0.36
PTPRN-202ENST00000409251 SLCO3A1Q9UIG8 710 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 ANKRD34BA5PLL1 514 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 DLGAP1O14490 977 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 DGKQP52824 942 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 CATSPEREQ5SY80 951 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 OTUD1Q5VV17 481 aaPredicted RBP12.82□□□□□ -0.36
PTPRN-202ENST00000409251 SCML4Q8N228 414 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 FNDC5Q8NAU1 212 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 ZNF420Q8TAQ5 688 aaPredicted RBP12.82□□□□□ -0.36
PTPRN-202ENST00000409251 MCOLN3Q8TDD5 553 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 FRS2Q8WU20 508 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 FAM162AQ96A26 154 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 CDK15Q96Q40 435 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 PCDHB7Q9Y5E2 793 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 UBXN8O00124 270 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 ENDOD1O94919 500 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 IRF1P10914 325 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 BMP2P12643 396 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 OR4D2P58180 307 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 DGUOKQ16854 277 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 SNAP47Q5SQN1 464 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 AGAP9Q5VTM2 703 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 USP43Q70EL4 1123 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 TMEM126BQ8IUX1 230 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 ANKFN1Q8N957 763 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 CEP19Q96LK0 163 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 UTS2RQ9UKP6 389 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 ORC6Q9Y5N6 252 aa12.82□□□□□ -0.36
PTPRN-202ENST00000409251 CCDC154A6NI56 674 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 MEN1O00255 615 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 EIF3FO00303 357 aaPredicted RBP12.81□□□□□ -0.36
PTPRN-202ENST00000409251 NBNO60934 754 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 GSNP06396 782 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 CCDC159P0C7I6 412 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 HLCSP50747 726 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 MGAT3Q09327 533 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 CDH17Q12864 832 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 ATP6AP1LQ52LC2 224 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 INTS6LQ5JSJ4 861 aaKnown RBP12.81□□□□□ -0.36
PTPRN-202ENST00000409251 KIAA1841Q6NSI8 718 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 NEPROQ6NW34 567 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 FUNDC1Q8IVP5 155 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 ADGRG5Q8IZF4 528 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 CFAP52Q8N1V2 620 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 ZNF540Q8NDQ6 660 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 BIRC7Q96CA5 298 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 SMPD4Q9NXE4 827 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 SCHIP1Q9P0W5 487 aaPredicted RBP12.81□□□□□ -0.36
PTPRN-202ENST00000409251 FZD10Q9ULW2 581 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 GABRDO14764 452 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 TRIM24O15164 1050 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 CNTN5O94779 1100 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 AP2A1O95782 977 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 CCDC85BQ15834 202 aaPredicted RBP12.81□□□□□ -0.36
PTPRN-202ENST00000409251 SMN1Q16637 294 aaKnown RBP12.81□□□□□ -0.36
PTPRN-202ENST00000409251 USP41Q3LFD5 358 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 STXBP5Q5T5C0 1151 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 TSTD2Q5T7W7 516 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 DHRS4L2Q6PKH6 230 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 SLC24A5Q71RS6 500 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 LRRC8DQ7L1W4 858 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 SPARTQ8N0X7 666 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 KLHDC9Q8NEP7 349 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 PPHLN1Q8NEY8 458 aaKnown RBP12.81□□□□□ -0.36
PTPRN-202ENST00000409251 CLHC1Q8NHS4 586 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 UBASH3BQ8TF42 649 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 TWIST2Q8WVJ9 160 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 ANKRD49Q8WVL7 239 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 ATL1Q8WXF7 558 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 SLC30A3Q99726 388 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 DNAI2Q9GZS0 605 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 HPS4Q9NQG7 708 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 AGPAT4Q9NRZ5 378 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 ITGB1BP2Q9UKP3 347 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 PRELID1Q9Y255 219 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 ZSCAN5BA6NJL1 495 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 G3V2T6 193 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 MITFO75030 526 aaPredicted RBP12.81□□□□□ -0.36
PTPRN-202ENST00000409251 ZNF682O95780 498 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 CHRM5P08912 532 aaPredicted RBP12.81□□□□□ -0.36
PTPRN-202ENST00000409251 PIGAP37287 484 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 ARSFP54793 590 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 UFM1P61960 85 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 OXA1LQ15070 435 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 DPYSL2Q16555 572 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 AAK1Q2M2I8 961 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 STEAP4Q687X5 459 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 PLEKHG7Q6ZR37 379 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 AHSA2Q719I0 299 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 PDZD4Q76G19 769 aaPredicted RBP12.81□□□□□ -0.36
PTPRN-202ENST00000409251 FAM83FQ8NEG4 500 aaPredicted RBP12.81□□□□□ -0.36
PTPRN-202ENST00000409251 KLHL5Q96PQ7 755 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 ALOXE3Q9BYJ1 711 aa12.81□□□□□ -0.36
PTPRN-202ENST00000409251 MAP10Q9P2G4 905 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms