RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PPTC7Q8NI37 304 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 TNFAIP8L1Q8WVP5 186 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 NCSTNQ92542 709 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 HNRNPABQ99729 332 aaKnown RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 CDADC1Q9BWV3 514 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 SGK2Q9HBY8 427 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 MRM3Q9HC36 420 aaKnown RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ARL8BQ9NVJ2 186 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF446Q9NWS9 450 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 NDOR1Q9UHB4 597 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF490Q9ULM2 529 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 TMEM5Q9Y2B1 443 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 POLR3HQ9Y535 204 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 AP1M2Q9Y6Q5 423 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 IRAK2O43187 625 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 MEGF6O75095 1541 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ADRB2P07550 413 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 HDCP19113 662 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 CRISP3P54108 245 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 GSTM4Q03013 218 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 DAG1Q14118 895 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 CMPK2Q5EBM0 449 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 MEDAGQ5VYS4 303 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ILDR1Q86SU0 546 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 LHFPL3Q86UP9 236 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 CLEC10AQ8IUN9 316 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 RBM15BQ8NDT2 890 aaKnown RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF548Q8NEK5 533 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-203ENST00000409050 SNX33Q8WV41 574 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 VMP1Q96GC9 406 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 KIF20BQ96Q89 1820 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 PIF1Q9H611 641 aa6.04□□□□□ -1.44
SCN1A-203ENST00000409050 TEX13CA0A0J9YWL9 993 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 OR2AG2A6NM03 316 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 CAPN14A8MX76 684 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 PDHXO00330 501 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 PET100P0DJ07 73 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 DNAJA1P31689 397 aaKnown RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 APLP1P51693 650 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 GBX2P52951 348 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 RGS8P57771 180 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 GNA12Q03113 381 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MERTKQ12866 999 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 SP140Q13342 867 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 TSTD2Q5T7W7 516 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 GALNT7Q86SF2 657 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 GPR135Q8IZ08 494 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 SLC44A3Q8N4M1 653 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 HDAC10Q969S8 669 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ELMO3Q96BJ8 720 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 CYP2S1Q96SQ9 504 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ACBD6Q9BR61 282 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 PCDH12Q9NPG4 1184 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 RBM7Q9Y580 266 aaKnown RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 PLIN4Q96Q06 1357 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MAGEB17A8MXT2 336 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 POP4O95707 220 aaKnown RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 RENP00797 406 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 GSTT2P0CG29 244 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 COL6A1P12109 1028 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF37AP17032 561 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 CDKN2BP42772 138 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 NSG1P42857 185 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 AP2S1P53680 142 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 JAM2P57087 298 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 IQCCQ4KMZ1 466 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 TIGD2Q4W5G0 525 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 WSCD1Q658N2 575 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 SLC30A10Q6XR72 485 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 DEF8Q6ZN54 512 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 TIFABQ6ZNK6 161 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 RELL1Q8IUW5 271 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 SMG7Q92540 1137 aaKnown RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 HAS1Q92839 578 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 FATE1Q969F0 183 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ZUFSPQ96AP4 578 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 RAD51AP1Q96B01 352 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 AURKBQ96GD4 344 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 FRMD6Q96NE9 622 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 EPYCQ99645 322 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 EVA1AQ9H8M9 152 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 USP29Q9HBJ7 922 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MCUBQ9NWR8 336 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MRPS7Q9Y2R9 242 aaKnown RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 TTLL8A6PVC2 850 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 H3BM21 787 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 NUAK1O60285 661 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 PSIP1O75475 530 aaKnown RBP6.03□□□□□ -1.44
SCN1A-203ENST00000409050 APOL3O95236 402 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 HPRP00739 348 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 IFNA21P01568 189 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 SLC35G6P0C7Q6 338 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ELFN1P0C7U0 828 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ADORA2AP29274 412 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 EPHA3P29320 983 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 GRIK2Q13002 908 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 ITGA7Q13683 1181 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 CAPSQ13938 189 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 PON3Q15166 354 aa6.03□□□□□ -1.44
SCN1A-203ENST00000409050 MOGQ16653 247 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms