RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 CCDC190Q86UF4 302 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 FOXRED2Q8IWF2 684 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 FBXO39Q8N4B4 442 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 TMEM199Q8N511 208 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 AFAP1Q8N556 730 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 SLC38A9Q8NBW4 561 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 CLEC18CQ8NCF0 446 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 TRIB2Q92519 343 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 SNX21Q969T3 373 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 CCDC114Q96M63 670 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 GFM1Q96RP9 751 aaKnown RBP4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 SLC22A12Q96S37 553 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 POLDIP3Q9BY77 421 aaKnown RBP4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 CHMP1AQ9HD42 196 aaPredicted RBP4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 EQTNQ9NQ60 294 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 TMEM51Q9NW97 253 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 DDX43Q9NXZ2 648 aaKnown RBP4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 TTC7AQ9ULT0 858 aaPredicted RBP4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 KNSTRNQ9Y448 316 aa4.84□□□□□ -1.63
HMGB1P13-201ENST00000406019 A0A0B4J293 547 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 HTR3EA5X5Y0 456 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 EIF4E1BA6NMX2 242 aaKnown RBP4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 IPO8O15397 1037 aaKnown RBP4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 NDUFS4O43181 175 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 ZNF217O75362 1048 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 CAMTA2O94983 1202 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 KCNK5O95279 499 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 DANCRP0C864 163 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 SRCP12931 536 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 PCGF2P35227 344 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 NAGLUP54802 743 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 KRTAP10-9P60411 292 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 HNRNPKP61978 463 aaKnown RBP eCLIP4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 CSNK2A1P68400 391 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 PPATQ06203 517 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 ACSM1Q08AH1 577 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 C17orf67Q0P5P2 114 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 PTK6Q13882 451 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 SYT16Q17RD7 645 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 NHSL2Q5HYW2 709 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 DCST1Q5T197 706 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 LINC00696Q6ZRV3 163 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 MEPCEQ7L2J0 689 aaKnown RBP4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 SHFQ7M4L6 423 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 SIX6OS1Q8N1H7 587 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 AADATQ8N5Z0 425 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 CSNK2A3Q8NEV1 391 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 BBS10Q8TAM1 723 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 RHBDF1Q96CC6 855 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 CDHR1Q96JP9 859 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 LYZL4Q96KX0 146 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 MS4A10Q96PG2 267 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 SMC6Q96SB8 1091 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 FERMT1Q9BQL6 677 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 CWC25Q9NXE8 425 aaPredicted RBP4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 OR6C3Q9NZP0 311 aa4.83□□□□□ -1.64
HMGB1P13-201ENST00000406019 IGSF1Q8N6C5 1336 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 FEZF1A0PJY2 475 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 H0YGN5 161 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 PTGESO14684 152 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 HSPA12AO43301 675 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 DDNO94850 711 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 SOX30O94993 753 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 SYF2O95926 243 aaKnown RBP4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 EGFP01133 1207 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 ADRA2CP18825 462 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 UGT1A1P22309 533 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 SP100P23497 879 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 HRH2P25021 359 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 CCKARP32238 428 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 HSPA4P34932 840 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 RFX5P48382 616 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 PGGT1BP53609 377 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 MAD2L1Q13257 205 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 MORF4L2Q15014 288 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 PKN2Q16513 984 aaKnown RBP4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 PARM1Q6UWI2 310 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 RAPH1Q70E73 1250 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 ATG9AQ7Z3C6 839 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 ABI3BPQ7Z7G0 1075 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 DSG4Q86SJ6 1040 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 MFN1Q8IWA4 741 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 ARL10Q8N8L6 244 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 OR8H1Q8NGG4 311 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 WDR20Q8TBZ3 569 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 MGARPQ8TDB4 240 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 EXT2Q93063 718 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 TAAR8Q969N4 342 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 NXNL1Q96CM4 212 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 RMDN2Q96LZ7 410 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 ZNF558Q96NG5 402 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 INTS14Q96SY0 518 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 OLFM1Q99784 485 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 RAD21L1Q9H4I0 556 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 MRPL44Q9H9J2 332 aaKnown RBP4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 COQ3Q9NZJ6 369 aa4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 SRPRBQ9Y5M8 271 aaKnown RBP4.82□□□□□ -1.64
HMGB1P13-201ENST00000406019 HEPACAM2A8MVW5 462 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms