RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 RASGEF1AQ8N9B8 481 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 DDHD1Q8NEL9 900 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 TSTD1Q8NFU3 115 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 AGR3Q8TD06 166 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 ZNF473Q8WTR7 871 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 RLN3Q8WXF3 142 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 INPP5DQ92835 1189 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 LGR4Q9BXB1 951 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 SLC17A9Q9BYT1 436 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 TPSD1Q9BZJ3 242 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 BTBD1Q9H0C5 482 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 NSRP1Q9H0G5 558 aaKnown RBP3.66□□□□□ -1.82
RTN4-208ENST00000404909 POPDC3Q9HBV1 291 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 CD248Q9HCU0 757 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 SIRPGQ9P1W8 387 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 WNT16Q9UBV4 365 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 MOSPD1Q9UJG1 213 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 IKZF3Q9UKT9 509 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 SCML1Q9UN30 329 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 CYP8B1Q9UNU6 501 aa3.66□□□□□ -1.82
RTN4-208ENST00000404909 IGLV3-16A0A075B6K0 115 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 TMEM202A6NGA9 273 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 SUPT3HB4E1H0 165 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 UBXN8O00124 270 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 MAGEC1O60732 1142 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 TRIM13O60858 407 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 SUPT3HO75486 399 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 WISP3O95389 354 aaPredicted RBP3.65□□□□□ -1.82
RTN4-208ENST00000404909 GUCA1CO95843 209 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 TSPAN12O95859 305 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 FGF3P11487 239 aaPredicted RBP3.65□□□□□ -1.82
RTN4-208ENST00000404909 DGKAP23743 735 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 DGKEP52429 567 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 DPTQ07507 201 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 SFSWAPQ12872 951 aaKnown RBP3.65□□□□□ -1.82
RTN4-208ENST00000404909 GTF2H3Q13889 308 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 FGL2Q14314 439 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 IRF4Q15306 451 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 PFKFB4Q16877 469 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 TTLL9Q3SXZ7 439 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 HSF5Q4G112 596 aaPredicted RBP3.65□□□□□ -1.82
RTN4-208ENST00000404909 SYTL3Q4VX76 610 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 TECRLQ5HYJ1 363 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 GKAP1Q5VSY0 366 aaPredicted RBP3.65□□□□□ -1.82
RTN4-208ENST00000404909 CES4AQ5XG92 561 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 ZYG11AQ6WRX3 759 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 RPS27LQ71UM5 84 aaKnown RBP3.65□□□□□ -1.82
RTN4-208ENST00000404909 ZNF771Q7L3S4 317 aaPredicted RBP3.65□□□□□ -1.82
RTN4-208ENST00000404909 LCA5Q86VQ0 697 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 HORMAD1Q86X24 394 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 MYO1HQ8N1T3 1032 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 CFAP61Q8NHU2 1237 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 STAG3L4Q8TBR4 150 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 HIC2Q96JB3 615 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 VPS35Q96QK1 796 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 DERL2Q9GZP9 239 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 WDR26Q9H7D7 661 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 TBC1D17Q9HA65 648 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 NPHS2Q9NP85 383 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 OXSMQ9NWU1 459 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 NCKIPSDQ9NZQ3 722 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 NFKBIL1Q9UBC1 381 aaPredicted RBP3.65□□□□□ -1.82
RTN4-208ENST00000404909 MID2Q9UJV3 735 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 DCTN4Q9UJW0 460 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 CNOT6Q9ULM6 557 aaKnown RBP3.65□□□□□ -1.82
RTN4-208ENST00000404909 CA5BQ9Y2D0 317 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 GOLGA4Q13439 2230 aaKnown RBP3.65□□□□□ -1.82
RTN4-208ENST00000404909 CACNA1IQ9P0X4 2223 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 SCN8AQ9UQD0 1980 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 LAMA1P25391 3075 aa3.65□□□□□ -1.82
RTN4-208ENST00000404909 SCAMP1O15126 338 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 RAD51BO15315 384 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 ITM2AO43736 263 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 ATG13O75143 517 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 SMIM24O75264 130 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 HSPA4LO95757 839 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 SERPINE1P05121 402 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 DCNP07585 359 aaKnown RBP3.65□□□□□ -1.83
RTN4-208ENST00000404909 ATP5F1P24539 256 aaPredicted RBP3.65□□□□□ -1.83
RTN4-208ENST00000404909 CCR10P46092 362 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 PREPP48147 710 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 SLC1A6P48664 564 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 ATP6V0D1P61421 351 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 CDK3Q00526 305 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 CREB5Q02930 508 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 TCEA2Q15560 299 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 LIPMQ5VYY2 423 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 KIAA1161Q6NSJ0 714 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 USP30Q70CQ3 517 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 ZNF765Q7L2R6 523 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 SYT13Q7L8C5 426 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 ADGRG6Q86SQ4 1221 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 FAM160A2Q8N612 972 aaPredicted RBP3.65□□□□□ -1.83
RTN4-208ENST00000404909 LILRA3Q8N6C8 439 aaPredicted RBP3.65□□□□□ -1.83
RTN4-208ENST00000404909 FRMD1Q8N878 549 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 RDH11Q8TC12 318 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 PPP4R1Q8TF05 950 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 KIAA1191Q96A73 305 aa3.65□□□□□ -1.83
RTN4-208ENST00000404909 FUBP1Q96AE4 644 aaKnown RBP3.65□□□□□ -1.83
RTN4-208ENST00000404909 GATA5Q9BWX5 397 aaPredicted RBP3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms