RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 STRA8Q7Z7C7 330 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 ALYREFQ86V81 257 aaKnown RBP15.69■□□□□ 0.1
HMGA1-204ENST00000401473 SCG3Q8WXD2 468 aaKnown RBP15.69■□□□□ 0.1
HMGA1-204ENST00000401473 EDEM2Q9BV94 578 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 ACSS3Q9H6R3 686 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 TRNAU1APQ9NX07 287 aaKnown RBP15.69■□□□□ 0.1
HMGA1-204ENST00000401473 MED16Q9Y2X0 877 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 ASXL3Q9C0F0 2248 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 KMOO15229 486 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 GIMD1P0DJR0 217 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 ACP5P13686 325 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 GTF2H3Q13889 308 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 AASDHQ4L235 1098 aaPredicted RBP15.69■□□□□ 0.1
HMGA1-204ENST00000401473 ZNF658BQ4V348 819 aaPredicted RBP15.69■□□□□ 0.1
HMGA1-204ENST00000401473 BCL7AQ4VC05 210 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 RNF187Q5TA31 235 aaPredicted RBP15.69■□□□□ 0.1
HMGA1-204ENST00000401473 EMBQ6PCB8 327 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 NAPRTQ6XQN6 538 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 KANSL1Q7Z3B3 1105 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 GALNT7Q86SF2 657 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 GATAD2AQ86YP4 633 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 CTAGE3PQ8IX95 158 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 KRT222Q8N1A0 295 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 LILRA3Q8N6C8 439 aaPredicted RBP15.69■□□□□ 0.1
HMGA1-204ENST00000401473 PPM1NQ8N819 430 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 ZNF548Q8NEK5 533 aaPredicted RBP15.69■□□□□ 0.1
HMGA1-204ENST00000401473 ACVR1CQ8NER5 493 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 LKAAEAR1Q8TD35 194 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 GPBAR1Q8TDU6 330 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 SAP25Q8TEE9 199 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 CAVIN3Q969G5 261 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 ZNF514Q96K75 400 aaPredicted RBP15.69■□□□□ 0.1
HMGA1-204ENST00000401473 LINC00615Q96LM1 132 aaPredicted RBP15.69■□□□□ 0.1
HMGA1-204ENST00000401473 OR2M4Q96R27 311 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 GALPQ9UBC7 116 aa15.69■□□□□ 0.1
HMGA1-204ENST00000401473 PRR19A6NJB7 356 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 DFNA5O60443 496 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 AP2A2O94973 939 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 CER1O95813 267 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 CTSEP14091 401 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 RPS3P23396 243 aaKnown RBP eCLIP15.68■□□□□ 0.11e-11■■□□□ 11.4
HMGA1-204ENST00000401473 PHBP35232 272 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 TIAL1Q01085 375 aaKnown RBP eCLIP15.68■□□□□ 0.1
HMGA1-204ENST00000401473 SLC26A11Q86WA9 606 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 ZC3HC1Q86WB0 502 aaKnown RBP15.68■□□□□ 0.1
HMGA1-204ENST00000401473 OXR1Q8N573 874 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 LMX1AQ8TE12 382 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 CDKL2Q92772 493 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 FAM136AQ96C01 138 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 CYTH2Q99418 400 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 KLC4Q9NSK0 619 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 KCNK6Q9Y257 313 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 DNAJC16Q9Y2G8 782 aa15.68■□□□□ 0.1
HMGA1-204ENST00000401473 PFDN6O15212 129 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 AQP9O43315 295 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 NIPSNAP2O75323 286 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 ITGB6P18564 788 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 EPHA8P29322 1005 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 HSD17B3P37058 310 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 PGGT1BP53609 377 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 ATXN3P54252 364 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 RBM20Q5T481 1227 aaKnown RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 FAM83HQ6ZRV2 1179 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 AMZ2Q86W34 360 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 LRRC6Q86X45 466 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 SFTPA2Q8IWL1 248 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 GABPB2Q8TAK5 448 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 UBLCP1Q8WVY7 318 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 MRRFQ96E11 262 aaKnown RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 ATXN7L3BQ96GX2 97 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 NDNQ99608 321 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 DNAAF2Q9NVR5 837 aaKnown RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 VPS9D1Q9Y2B5 631 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 DNMT3AQ9Y6K1 912 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 A0A087WUV0 522 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 C4orf47A7E2U8 309 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 YY2O15391 372 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 TRIM16O95361 564 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 EML2O95834 649 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 ESR1P03372 595 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 SHBGP04278 402 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 ABHD2P08910 425 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 OR56A5P0C7T3 313 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 PKMP14618 531 aaKnown RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 PBLDP30039 288 aaPredicted RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 CCR7P32248 378 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 ARHGAP8P85298 464 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 NFE2L1Q14494 772 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 INSCQ1MX18 579 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 PTRHD1Q6GMV3 140 aaKnown RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 SLC30A9Q6PML9 568 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 OR2L2Q8NH16 312 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 CCM2Q9BSQ5 444 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 SPATS2LQ9NUQ6 558 aaKnown RBP15.67■□□□□ 0.1
HMGA1-204ENST00000401473 SPASTQ9UBP0 616 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 FAM8A1Q9UBU6 413 aa15.67■□□□□ 0.1
HMGA1-204ENST00000401473 RP1P56715 2156 aa15.66■□□□□ 0.1
HMGA1-204ENST00000401473 MGAT4DA6NG13 374 aa15.66■□□□□ 0.1
HMGA1-204ENST00000401473 H3BM21 787 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms