RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 INPP5AQ14642 412 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 SCAIQ8N9R8 606 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 ZNF461Q8TAF7 563 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 HMGCLL1Q8TB92 370 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 SGCDQ92629 289 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 NUSAP1Q9BXS6 441 aaKnown RBP9.54□□□□□ -0.88
COL6A3-204ENST00000392003 BACE2Q9Y5Z0 518 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 SLC4A7Q9Y6M7 1214 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 COMMD3-BMI1R4GMX3 469 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 ANKRD34BA5PLL1 514 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 PRORSD1PA6NEY8 169 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 PPP6CO00743 305 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 TRIM24O15164 1050 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 DNAJA2O60884 412 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 CLTBP09497 229 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 ACRP10323 421 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 CR2P20023 1033 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 S100A1P23297 94 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 TIAL1Q01085 375 aaKnown RBP eCLIP9.54□□□□□ -0.88
COL6A3-204ENST00000392003 TLR1Q15399 786 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 LINGO4Q6UY18 593 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 LILRA2Q8N149 483 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 NATD1Q8N6N6 113 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 DIS3LQ8TF46 1054 aaKnown RBP9.54□□□□□ -0.88
COL6A3-204ENST00000392003 STARD8Q92502 1023 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 LINGO1Q96FE5 620 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 PRICKLE1Q96MT3 831 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-204ENST00000392003 CGREF1Q99674 301 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 MRPL17Q9NRX2 175 aaKnown RBP9.54□□□□□ -0.88
COL6A3-204ENST00000392003 TMEM181Q9P2C4 612 aa9.54□□□□□ -0.88
COL6A3-204ENST00000392003 OAS3Q9Y6K5 1087 aaKnown RBP9.54□□□□□ -0.88
COL6A3-204ENST00000392003 TET1Q8NFU7 2136 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 H3BNC9 293 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 AKAP10O43572 662 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 TBL1XO60907 577 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 NIPSNAP2O75323 286 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 TNFAIP8O95379 198 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 FAM58BPP0C7Q3 252 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 UROSP10746 265 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 CHRNB1P11230 501 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 IL10P22301 178 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 PTGER3P43115 390 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 GRB7Q14451 532 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 VPS26BQ4G0F5 336 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 DEPDC1Q5TB30 811 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 PTRHD1Q6GMV3 140 aaKnown RBP9.53□□□□□ -0.88
COL6A3-204ENST00000392003 CCDC81Q6ZN84 652 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 OTOP2Q7RTS6 562 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 TNIP2Q8NFZ5 429 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 GLMNQ92990 594 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 PAWRQ96IZ0 340 aaKnown RBP9.53□□□□□ -0.88
COL6A3-204ENST00000392003 KCNA7Q96RP8 456 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 GIMAP2Q9UG22 337 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 POLG2Q9UHN1 485 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 ITGB1BP2Q9UKP3 347 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 TBC1D30Q9Y2I9 924 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 THSD7BQ9C0I4 1608 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 PRLP01236 227 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 ESR1P03372 595 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 KLKB1P03952 638 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 SOD2P04179 222 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 RPS17P08708 135 aaKnown RBP9.53□□□□□ -0.88
COL6A3-204ENST00000392003 PSMC3P17980 439 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 FOXA1P55317 472 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 BNIP2Q12982 314 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 GRM2Q14416 872 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 FBXO48Q5FWF7 155 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 PSAPL1Q6NUJ1 521 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 FBXL19Q6PCT2 694 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 ANKRD33Q7Z3H0 272 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 SIDT2Q8NBJ9 832 aaKnown RBP9.53□□□□□ -0.88
COL6A3-204ENST00000392003 OR2T34Q8NGX1 318 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 OR2T3Q8NH03 318 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 FUBP1Q96AE4 644 aaKnown RBP9.53□□□□□ -0.88
COL6A3-204ENST00000392003 TOX2Q96NM4 488 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 SEMA6AQ9H2E6 1030 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 CWH43Q9H720 699 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 SIAEQ9HAT2 523 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 FAIMQ9NVQ4 179 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 PRKAG2Q9UGJ0 569 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 YIPF1Q9Y548 306 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 PCDHB9Q9Y5E1 797 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 HEMK1Q9Y5R4 338 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-204ENST00000392003 PTGDR2Q9Y5Y4 395 aa9.53□□□□□ -0.88
COL6A3-204ENST00000392003 ABHD14A-ACY1A0A1B0GW23 586 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 ZNF839A8K0R7 811 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 SNAP91O60641 907 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 MATN4O95460 622 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 CLPTM1O96005 669 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 CSF2RAP15509 400 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 LAG3P18627 525 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 GRIA3P42263 894 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 CLCN4P51793 760 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 SMAD3P84022 425 aaKnown RBP9.52□□□□□ -0.88
COL6A3-204ENST00000392003 CDH18Q13634 790 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 NFYCQ13952 458 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 IGSF11Q5DX21 431 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 C6orf132Q5T0Z8 1188 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 ARMC12Q5T9G4 340 aa9.52□□□□□ -0.88
COL6A3-204ENST00000392003 UGT2A3Q6UWM9 527 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms