RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 EEF1AKMT1Q8WVE0 214 aa14.34□□□□□ -0.11
TCOF1-202ENST00000377797 TPD52L3Q96J77 140 aa14.34□□□□□ -0.11
TCOF1-202ENST00000377797 PPM1MQ96MI6 270 aa14.34□□□□□ -0.11
TCOF1-202ENST00000377797 CLDND1Q9NY35 253 aa14.34□□□□□ -0.11
TCOF1-202ENST00000377797 SLCO3A1Q9UIG8 710 aa14.34□□□□□ -0.11
TCOF1-202ENST00000377797 KNL1Q8NG31 2342 aa14.34□□□□□ -0.11
TCOF1-202ENST00000377797 HNRNPRO43390 633 aaKnown RBP14.33□□□□□ -0.11
TCOF1-202ENST00000377797 PGLSO95336 258 aa14.33□□□□□ -0.11
TCOF1-202ENST00000377797 PPP2R1BP30154 601 aa14.33□□□□□ -0.11
TCOF1-202ENST00000377797 DENND1AQ8TEH3 1009 aa14.33□□□□□ -0.11
TCOF1-202ENST00000377797 RTP3Q9BQQ7 232 aa14.33□□□□□ -0.11
TCOF1-202ENST00000377797 TDRD1Q9BXT4 1180 aaKnown RBP14.33□□□□□ -0.11
TCOF1-202ENST00000377797 HPS4Q9NQG7 708 aa14.33□□□□□ -0.11
TCOF1-202ENST00000377797 ZDHHC2Q9UIJ5 367 aa14.33□□□□□ -0.11
TCOF1-202ENST00000377797 AP3M1Q9Y2T2 418 aa14.33□□□□□ -0.11
TCOF1-202ENST00000377797 MCM3APO60318 1980 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 SLC31A1O15431 190 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 DLDP09622 509 aaKnown RBP14.33□□□□□ -0.12
TCOF1-202ENST00000377797 NRF1Q16656 503 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 DPY19L3Q6ZPD9 716 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 OTUB2Q96DC9 234 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 OR2AG1Q9H205 316 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 IMPAD1Q9NX62 359 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 GALPQ9UBC7 116 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 CDH22Q9UJ99 828 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 BBIP1A8MTZ0 92 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 H0Y858 1186 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 RFXANKO14593 260 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 C8GP07360 202 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 MAT2AP31153 395 aaKnown RBP14.33□□□□□ -0.12
TCOF1-202ENST00000377797 RALGDSQ12967 914 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 LDLRAP1Q5SW96 308 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 MFSD4BQ5TF39 518 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 CYP20A1Q6UW02 462 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 ZNF614Q8N883 585 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 MARCH4Q9P2E8 410 aaPredicted RBP14.33□□□□□ -0.12
TCOF1-202ENST00000377797 TMCC3Q9ULS5 477 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 MAPRE3Q9UPY8 281 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 ZCWPW2A0A1B0GU75 182 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 LCHNA4D1U4 455 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 KELP23276 732 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 NRG1Q02297 640 aaPredicted RBP14.33□□□□□ -0.12
TCOF1-202ENST00000377797 RIPK1Q13546 671 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 ZNF549Q6P9A3 640 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 PAOXQ6QHF9 649 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 KLK6Q92876 244 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 PEX13Q92968 403 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 SCN3BQ9NY72 215 aa14.33□□□□□ -0.12
TCOF1-202ENST00000377797 PAPPA2Q9BXP8 1791 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 UPK3BL1B0FP48 263 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 UPK3BL2E5RIL1 263 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 SOCS5O75159 536 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 SLC26A3P40879 764 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 MAGEA6P43360 314 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 LEPRP48357 1165 aaKnown RBP14.32□□□□□ -0.12
TCOF1-202ENST00000377797 GSTA3Q16772 222 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 RPS27LQ71UM5 84 aaKnown RBP14.32□□□□□ -0.12
TCOF1-202ENST00000377797 PYCR2Q96C36 320 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 HOPXQ9BPY8 73 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-202ENST00000377797 PSMD13Q9UNM6 376 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 ACTL7AQ9Y615 435 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 CCNFP41002 786 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 POLR2JP52435 117 aaKnown RBP14.32□□□□□ -0.12
TCOF1-202ENST00000377797 NTHL1P78549 312 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 Q6ZVL8 140 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 TMEM173Q86WV6 379 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-202ENST00000377797 PGAM4Q8N0Y7 254 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 SELENONQ9NZV5 590 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 RECQL5O94762 991 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-202ENST00000377797 LATS1O95835 1130 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 FGF3P11487 239 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-202ENST00000377797 HLA-EP13747 358 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 ATF6P18850 670 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 APCDD1Q8J025 514 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 NT5C3BQ969T7 300 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 ARHGEF3Q9NR81 526 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 OSER1Q9NX31 292 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 QSER1Q2KHR3 1735 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 FAM155AB1AL88 458 aaPredicted RBP14.32□□□□□ -0.12
TCOF1-202ENST00000377797 K7EPI3 171 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 HNRNPA1P09651 372 aaKnown RBP eCLIP14.32□□□□□ -0.12
TCOF1-202ENST00000377797 CRATP43155 626 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 BNIP2Q12982 314 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 HDDC3Q8N4P3 179 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 OR9Q1Q8NGQ5 310 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 CDK15Q96Q40 435 aa14.32□□□□□ -0.12
TCOF1-202ENST00000377797 TRMT61BQ9BVS5 477 aaKnown RBP14.32□□□□□ -0.12
TCOF1-202ENST00000377797 BHMG1C9JSJ3 638 aaPredicted RBP14.31□□□□□ -0.12
TCOF1-202ENST00000377797 DNAJB1P25685 340 aa14.31□□□□□ -0.12
TCOF1-202ENST00000377797 CTGFP29279 349 aa14.31□□□□□ -0.12
TCOF1-202ENST00000377797 KLHDC10Q6PID8 442 aa14.31□□□□□ -0.12
TCOF1-202ENST00000377797 ZDHHC13Q8IUH4 622 aa14.31□□□□□ -0.12
TCOF1-202ENST00000377797 MARCH5Q9NX47 278 aa14.31□□□□□ -0.12
TCOF1-202ENST00000377797 SLC27A6Q9Y2P4 619 aa14.31□□□□□ -0.12
TCOF1-202ENST00000377797 SLC35E2BP0CK96 405 aa14.31□□□□□ -0.12
TCOF1-202ENST00000377797 IDSP22304 550 aa14.31□□□□□ -0.12
TCOF1-202ENST00000377797 VIPR1P32241 457 aa14.31□□□□□ -0.12
TCOF1-202ENST00000377797 AAGABQ6PD74 315 aa14.31□□□□□ -0.12
TCOF1-202ENST00000377797 PAGE2Q7Z2X7 111 aa14.31□□□□□ -0.12
TCOF1-202ENST00000377797 AMIGO2Q86SJ2 522 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms