RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 MGAT4DA6NG13 374 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 OR52A4PA6NMU1 304 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 RAD51CO43502 376 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 B4GAT1O43505 415 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 VAPBO95292 243 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 ALDH4A1P30038 563 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 ITGA8P53708 1063 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 DHX9Q08211 1270 aaKnown RBP13.12□□□□□ -0.31
VPS28-202ENST00000377348 DMPKQ09013 629 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 ITIH4Q14624 930 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 CLCA4Q14CN2 919 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 AMZ1Q400G9 498 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 MSS51Q4VC12 460 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.12□□□□□ -0.31
VPS28-202ENST00000377348 ZNF438Q7Z4V0 828 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 PCGF5Q86SE9 256 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 HOOK3Q86VS8 718 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 CCNJLQ8IV13 435 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 ZNF669Q96BR6 464 aaPredicted RBP13.12□□□□□ -0.31
VPS28-202ENST00000377348 SIGLEC10Q96LC7 697 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 LINC00615Q96LM1 132 aaPredicted RBP13.12□□□□□ -0.31
VPS28-202ENST00000377348 LRRN3Q9H3W5 708 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 SAMD15Q9P1V8 674 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 ZNF624Q9P2J8 865 aaPredicted RBP13.12□□□□□ -0.31
VPS28-202ENST00000377348 ANAPC5Q9UJX4 755 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 SNX24Q9Y343 169 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 MSRB2Q9Y3D2 182 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 PCDHB1Q9Y5F3 818 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 KNTC1P50748 2209 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 ACACBO00763 2458 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 IGF2RP11717 2491 aa13.12□□□□□ -0.31
VPS28-202ENST00000377348 KIR2DS5A0A0G2JLQ3 304 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 A0A0G2JNG1 304 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 FAM237BA0A1B0GVD1 139 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 EFCAB8A8MWE9 144 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 KIR2DS3K7RE56 304 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 NTN3O00634 580 aaPredicted RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 TP73O15350 636 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 CD3EAPO15446 510 aaKnown RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 CSO75390 466 aaKnown RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 SEC31AO94979 1220 aaKnown RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 POLBP06746 335 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 F7P08709 466 aaPredicted RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 PNLIPP16233 465 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 SLC19A1P41440 591 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 NSG1P42857 185 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 RPL21P46778 160 aaKnown RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 FASLGP48023 281 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 ARCN1P48444 511 aaKnown RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 PDX1P52945 283 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 UBE2IP63279 158 aaKnown RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 HHEXQ03014 270 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 SPIDRQ14159 915 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 KIR2DS5Q14953 304 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 MORF4L2Q15014 288 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 BBS9Q3SYG4 887 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 ANKRD20A4Q4UJ75 823 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 NKAIN2Q5VXU1 208 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 KIAA0930Q6ICG6 404 aaPredicted RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 HIBCHQ6NVY1 386 aaPredicted RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 ABRAXAS1Q6UWZ7 409 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 PACS1Q6VY07 963 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 RBM44Q6ZP01 1051 aaKnown RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 ZNF572Q7Z3I7 529 aaPredicted RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 TMPRSS9Q7Z410 1059 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 SLC9B2Q86UD5 537 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 CFAP206Q8IYR0 622 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 OTUD6BQ8N6M0 293 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 DCBLD1Q8N8Z6 715 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 SPDYE1Q8NFV5 336 aaPredicted RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 OR2L2Q8NH16 312 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 SNF8Q96H20 258 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 SGSM3Q96HU1 749 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 DPH5Q9H2P9 285 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 SARS2Q9NP81 518 aaKnown RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 CPNE7Q9UBL6 633 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 CFAP20Q9Y6A4 193 aaKnown RBP13.11□□□□□ -0.31
VPS28-202ENST00000377348 RPS6KL1Q9Y6S9 549 aa13.11□□□□□ -0.31
VPS28-202ENST00000377348 COL27A1Q8IZC6 1860 aaPredicted RBP13.1□□□□□ -0.31
VPS28-202ENST00000377348 ZCWPW2A0A1B0GU75 182 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 MAGEB16A2A368 324 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 FAM187AA6NFU0 413 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 OR5K4A6NMS3 321 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 C1QTNF9BB2RNN3 333 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 KCNJ13O60928 360 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 C1QTNF9P0C862 333 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 SLC2A4P14672 509 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 ITGB6P18564 788 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 XRCC1P18887 633 aaPredicted RBP13.1□□□□□ -0.31
VPS28-202ENST00000377348 CAMK2BQ13554 666 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 NR1D2Q14995 579 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 ZNF658BQ4V348 819 aaPredicted RBP13.1□□□□□ -0.31
VPS28-202ENST00000377348 HP1BP3Q5SSJ5 553 aaPredicted RBP13.1□□□□□ -0.31
VPS28-202ENST00000377348 AGAP9Q5VTM2 703 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 LYPLAL1Q5VWZ2 237 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 METRNLQ641Q3 311 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 DUS1LQ6P1R4 473 aaKnown RBP13.1□□□□□ -0.31
VPS28-202ENST00000377348 WASH2PQ6VEQ5 465 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 NAPRTQ6XQN6 538 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 CERS6Q6ZMG9 384 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms