RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 WIPF3A6NGB9 483 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 A8MXQ7 604 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 KPNA7A9QM74 516 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 HACD1B0YJ81 288 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 TRDMT1O14717 391 aaKnown RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 XPO1O14980 1071 aaKnown RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 KCNN4O15554 427 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 ATP2C2O75185 946 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 DAB1O75553 588 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 GCATO75600 419 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 GRAP2O75791 330 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 DCTN3O75935 186 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 ATP5HO75947 161 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 IL33O95760 270 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 RHOP08100 348 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 INHBAP08476 426 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 DHRS4L1P0CG22 281 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 NQO1P15559 274 aaKnown RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 BDNFP23560 247 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 AKAP5P24588 427 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 PRKCHP24723 683 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 CYP2F1P24903 491 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 RBL1P28749 1068 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 CD6P30203 668 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 LRPAP1P30533 357 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 HOXC8P31273 242 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 RPA3P35244 121 aaPredicted RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 ELK3P41970 407 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 TAF6P49848 677 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 CPT1AP50416 773 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 MAP2K6P52564 334 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 ELF3P78545 371 aaPredicted RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 DNAJC3Q13217 504 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 SEMA5AQ13591 1074 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 GRM3Q14832 879 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 EFTUD2Q15029 972 aaKnown RBP eCLIP4.85□□□□□ -1.639e-8■■□□□ 14
USP48-202ENST00000374730 SLC1A5Q15758 541 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 CA9Q16790 459 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 SOWAHAQ2M3V2 549 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 PGS1Q32NB8 556 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 RAB6CQ53S08 254 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 SLC45A4Q5BKX6 768 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 PLAC9Q5JTB6 97 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 EFHC1Q5JVL4 640 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 RBM20Q5T481 1227 aaKnown RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 C1orf228Q6PIY5 440 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 LVRNQ6Q4G3 990 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 C3orf62Q6ZUJ4 267 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 SH2D5Q6ZV89 423 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 BZW1Q7L1Q6 419 aaKnown RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 ASRGL1Q7L266 308 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 BNIPLQ7Z465 357 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 SLC26A11Q86WA9 606 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 ECHDC2Q86YB7 292 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 TEX19Q8NA77 164 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 OR6B3Q8NGW1 331 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 C10orf82Q8WW14 230 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 FKBP10Q96AY3 582 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 C18orf25Q96B23 403 aaPredicted RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 FAM136AQ96C01 138 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 HSPBAP1Q96EW2 488 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 APOPT1Q96IL0 206 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 TNIP3Q96KP6 325 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 RMDN2Q96LZ7 410 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 OLFM3Q96PB7 478 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 HAPLN3Q96S86 360 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 NELL2Q99435 816 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 SYT17Q9BSW7 474 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 KATNAL1Q9BW62 490 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 TRIM6Q9C030 488 aaPredicted RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 RAB6CQ9H0N0 254 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 FAM49AQ9H0Q0 323 aaPredicted RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 CXCL16Q9H2A7 254 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 DPEP3Q9H4B8 488 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 NXF3Q9H4D5 531 aaKnown RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 ECT2Q9H8V3 914 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 POPDC2Q9HBU9 364 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 XAB2Q9HCS7 855 aaKnown RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 NMRK2Q9NPI5 230 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 EIF2B3Q9NR50 452 aaKnown RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 TXLNGQ9NUQ3 528 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 FAM49BQ9NUQ9 324 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 ETNK2Q9NVF9 386 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 MRPS18AQ9NVS2 196 aaKnown RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 GPATCH2LQ9NWQ4 482 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 MTMR10Q9NXD2 777 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.85□□□□□ -1.634e-7■■■■□ 26.4
USP48-202ENST00000374730 FBXO9Q9UK97 447 aaPredicted RBP4.85□□□□□ -1.63
USP48-202ENST00000374730 GJD2Q9UKL4 321 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 GRID1Q9ULK0 1009 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 PHTF1Q9UMS5 762 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 Q9Y3F1 56 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 TTLL3Q9Y4R7 772 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 NR2E3Q9Y5X4 410 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 RAD54BQ9Y620 910 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 NLRC5Q86WI3 1866 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 CASP8AP2Q9UKL3 1982 aa4.85□□□□□ -1.63
USP48-202ENST00000374730 SHROOM3Q8TF72 1996 aa4.84□□□□□ -1.63
USP48-202ENST00000374730 MYO16Q9Y6X6 1858 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms