RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 NKD1Q969G9 470 aa21.31■■□□□ 1
CCDC28B-201ENST00000373602 CXorf40BQ96DE9 158 aa21.31■■□□□ 1
CCDC28B-201ENST00000373602 TEFMQ96QE5 360 aaKnown RBP21.31■■□□□ 1
CCDC28B-201ENST00000373602 TBL1YQ9BQ87 522 aa21.31■■□□□ 1
CCDC28B-201ENST00000373602 ARNT2Q9HBZ2 717 aa21.31■■□□□ 1
CCDC28B-201ENST00000373602 KLHL3Q9UH77 587 aa21.31■■□□□ 1
CCDC28B-201ENST00000373602 OR2AG2A6NM03 316 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 SRP72O76094 671 aaKnown RBP21.3■■□□□ 1
CCDC28B-201ENST00000373602 UBXN7O94888 489 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 CRTAMO95727 393 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 PTMAP06454 111 aaKnown RBP21.3■■□□□ 1
CCDC28B-201ENST00000373602 ANKRD34CP0C6C1 535 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 ATP1A2P50993 1020 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 GFERP55789 205 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 PDE1BQ01064 536 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 LONRF2Q1L5Z9 754 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 ZNF843Q8N446 348 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 JPH3Q8WXH2 748 aaPredicted RBP21.3■■□□□ 1
CCDC28B-201ENST00000373602 ZNF514Q96K75 400 aaPredicted RBP21.3■■□□□ 1
CCDC28B-201ENST00000373602 C19orf43Q9BQ61 176 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 ASB8Q9H765 288 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 FBXO8Q9NRD0 319 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 FEZ2Q9UHY8 353 aaPredicted RBP21.3■■□□□ 1
CCDC28B-201ENST00000373602 FKBPLQ9UIM3 349 aa21.3■■□□□ 1
CCDC28B-201ENST00000373602 ZNF106Q9H2Y7 1883 aaKnown RBP21.3■■□□□ 1
CCDC28B-201ENST00000373602 TYRP1P17643 537 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 AMD1P17707 334 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 WT1P19544 449 aaPredicted RBP21.29■■□□□ 1
CCDC28B-201ENST00000373602 MSH3P20585 1137 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 HALP42357 657 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 XIAPP98170 497 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 GPR18Q14330 331 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 SPARCL1Q14515 664 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 PARP6Q2NL67 630 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 FAM83HQ6ZRV2 1179 aaPredicted RBP21.29■■□□□ 1
CCDC28B-201ENST00000373602 RTP4Q96DX8 246 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 HES6Q96HZ4 224 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 C9orf72Q96LT7 481 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 SPRY4Q9C004 299 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 PCDHGA4Q9Y5G9 962 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 CAPN6Q9Y6Q1 641 aa21.29■■□□□ 1
CCDC28B-201ENST00000373602 AGAP14A8MT82 685 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 AKT1P31749 480 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 ZNF140P52738 457 aaPredicted RBP21.28■■□□□ 1
CCDC28B-201ENST00000373602 LY6DQ14210 128 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 NFE2L1Q14494 772 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 FNBP1LQ5T0N5 605 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 KCTD11Q693B1 232 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 CEACAM20Q6UY09 585 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 ARHGEF18Q6ZSZ5 1173 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 RNF10Q8N5U6 811 aaKnown RBP21.28■■□□□ 1
CCDC28B-201ENST00000373602 FAM71DQ8N9W8 422 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 ZSCAN1Q8NBB4 408 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 OR13C4Q8NGS5 318 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 SLC35B2Q8TB61 432 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 RSC1A1Q92681 617 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 LRRC45Q96CN5 670 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 ZPBPQ9BS86 351 aa21.28■■□□□ 1
CCDC28B-201ENST00000373602 R3HDM2Q9Y2K5 976 aaKnown RBP21.28■■□□□ 1
CCDC28B-201ENST00000373602 TOX3O15405 576 aaPredicted RBP21.27■■□□□ 1
CCDC28B-201ENST00000373602 CAPN5O15484 640 aaPredicted RBP21.27■■□□□ 1
CCDC28B-201ENST00000373602 CAPZBP47756 277 aa21.27■■□□□ 1
CCDC28B-201ENST00000373602 RPE65Q16518 533 aa21.27■■□□□ 1
CCDC28B-201ENST00000373602 METRNLQ641Q3 311 aa21.27■■□□□ 1
CCDC28B-201ENST00000373602 BEND7Q8N7W2 519 aaPredicted RBP21.27■■□□□ 1
CCDC28B-201ENST00000373602 TGM7Q96PF1 710 aa21.27■■□□□ 1
CCDC28B-201ENST00000373602 CTRCQ99895 268 aa21.27■■□□□ 1
CCDC28B-201ENST00000373602 SEMA4CQ9C0C4 833 aa21.27■■□□□ 1
CCDC28B-201ENST00000373602 SIDT1Q9NXL6 827 aaKnown RBP21.27■■□□□ 1
CCDC28B-201ENST00000373602 EPHA6Q9UF33 1036 aa21.27■■□□□ 1
CCDC28B-201ENST00000373602 PILRAQ9UKJ1 303 aa21.27■■□□□ 1
CCDC28B-201ENST00000373602 BAHCC1Q9P281 2608 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 TCRBV7S2A1N4TA0A589 114 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 KLHL33A6NCF5 533 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 MGAT4DA6NG13 374 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 LDB2O43679 373 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 RAD1O60671 282 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 METTL18O95568 372 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 ITGB2P05107 769 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 HADHAP40939 763 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 LEPRP48357 1165 aaKnown RBP21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 GDF10P55107 478 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 BCL7AQ4VC05 210 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 DET1Q7L5Y6 550 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 CACNA2D3Q8IZS8 1091 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 IL22RA1Q8N6P7 574 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 ULK4Q96C45 1275 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 RAB33BQ9H082 229 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 APMAPQ9HDC9 416 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 CRLS1Q9UJA2 301 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 PSMD13Q9UNM6 376 aa21.26■□□□□ 0.99
CCDC28B-201ENST00000373602 GOLGA6L6A8MZA4 724 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 POLR1CO15160 346 aaPredicted RBP21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 SGTAO43765 313 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 ITGALP20701 1170 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 PBLDP30039 288 aaPredicted RBP21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 TMPRSS15P98073 1019 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 P3H1Q32P28 736 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 LINC00303Q3SY05 128 aa21.25■□□□□ 0.99
CCDC28B-201ENST00000373602 PRSS42Q7Z5A4 293 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms