RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 DRD3P35462 400 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 MAGEA9P43362 315 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 ELP6Q0PNE2 266 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 GBX1Q14549 363 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 LSM12Q3MHD2 195 aaKnown RBP13.58□□□□□ -0.24
PTPRF-202ENST00000372405 PIP5KL1Q5T9C9 394 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 CLEC6AQ6EIG7 209 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 CHPFQ8IZ52 775 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 NRSN1Q8IZ57 195 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 MICALL1Q8N3F8 863 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 ZNF513Q8N8E2 541 aaPredicted RBP13.58□□□□□ -0.24
PTPRF-202ENST00000372405 ESAMQ96AP7 390 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 KLHL29Q96CT2 875 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 PPP1R16AQ96I34 528 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 NECTIN4Q96NY8 510 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 VPS35Q96QK1 796 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 P2RY13Q9BPV8 354 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 LRMDAQ9H2I8 198 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 EML4Q9HC35 981 aaKnown RBP13.58□□□□□ -0.24
PTPRF-202ENST00000372405 ZBTB26Q9HCK0 441 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 TCF7L2Q9NQB0 619 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 RAD18Q9NS91 495 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 LNPEPQ9UIQ6 1025 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 CNOT6Q9ULM6 557 aaKnown RBP13.58□□□□□ -0.24
PTPRF-202ENST00000372405 FIS1Q9Y3D6 152 aa13.58□□□□□ -0.24
PTPRF-202ENST00000372405 GRXCR2A6NFK2 248 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 K7ESM1 405 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 SDHDO14521 159 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 RECQL5O94762 991 aaPredicted RBP13.57□□□□□ -0.24
PTPRF-202ENST00000372405 OR56A5P0C7T3 313 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 C6P13671 934 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 IGFBP4P22692 258 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 RGS4P49798 205 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 SEC13P55735 322 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 CREB5Q02930 508 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 BTKQ06187 659 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 PHKG1Q16816 387 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 ZNF284Q2VY69 593 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 C18orf21Q32NC0 220 aaPredicted RBP13.57□□□□□ -0.24
PTPRF-202ENST00000372405 UGT3A2Q3SY77 523 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 TMEM52BQ4KMG9 183 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 CYP2U1Q7Z449 544 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 RAB44Q7Z6P3 723 aaPredicted RBP13.57□□□□□ -0.24
PTPRF-202ENST00000372405 ADAMTSL2Q86TH1 951 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 CACUL1Q86Y37 369 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 MYO1HQ8N1T3 1032 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 AADATQ8N5Z0 425 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 BEND7Q8N7W2 519 aaPredicted RBP13.57□□□□□ -0.24
PTPRF-202ENST00000372405 STON2Q8WXE9 905 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 GLYATL1Q969I3 302 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 UTP4Q969X6 686 aaKnown RBP13.57□□□□□ -0.24
PTPRF-202ENST00000372405 NSL1Q96IY1 281 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 MAELQ96JY0 434 aaKnown RBP13.57□□□□□ -0.24
PTPRF-202ENST00000372405 PANX3Q96QZ0 392 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 HDAC8Q9BY41 377 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 KCTD5Q9NXV2 234 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 KLHL42Q9P2K6 505 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 PCTPQ9UKL6 214 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 TRAF6Q9Y4K3 522 aa13.57□□□□□ -0.24
PTPRF-202ENST00000372405 C1QTNF3-AMACRE9PGA6 284 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 MAGEC1O60732 1142 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 SKAP2O75563 359 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-202ENST00000372405 CD1EP15812 388 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 AOC1P19801 751 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 TIE1P35590 1138 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 FOXA1P55317 472 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 SATB1Q01826 763 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 CLCQ05315 142 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 CAMK2GQ13555 558 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-202ENST00000372405 LRIT3Q3SXY7 679 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 PREPLQ4J6C6 727 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-202ENST00000372405 DSG4Q86SJ6 1040 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 VRK3Q8IV63 474 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 TRPC4APQ8TEL6 797 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 ZNF483Q8TF39 744 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-202ENST00000372405 RSPH9Q9H1X1 276 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-202ENST00000372405 NUDT4Q9NZJ9 180 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 CD274Q9NZQ7 290 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 CD207Q9UJ71 328 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 ZNF225Q9UK10 706 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 FADS3Q9Y5Q0 445 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 TRPM6Q9BX84 2022 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 OR2AG2A6NM03 316 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 E2F3O00716 465 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 INPP4BO15327 924 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 MID1O15344 667 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 ENO1P06733 434 aaKnown RBP13.56□□□□□ -0.24
PTPRF-202ENST00000372405 KRT16P08779 473 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 NQO1P15559 274 aaKnown RBP13.56□□□□□ -0.24
PTPRF-202ENST00000372405 PRDX3P30048 256 aaKnown RBP13.56□□□□□ -0.24
PTPRF-202ENST00000372405 CTHP32929 405 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 TNFRSF4P43489 277 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 CTSCP53634 463 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 TAS2R38P59533 333 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 TMEM198Q66K66 360 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 ANKS6Q68DC2 871 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 RAVER1Q8IY67 606 aaKnown RBP13.56□□□□□ -0.24
PTPRF-202ENST00000372405 RASGEF1AQ8N9B8 481 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 FBXO27Q8NI29 283 aa13.56□□□□□ -0.24
PTPRF-202ENST00000372405 CSGALNACT1Q8TDX6 532 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms