RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ATAD1Q8NBU5 361 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 GIPC3Q8TF64 312 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 EDEM1Q92611 657 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 POP5Q969H6 163 aaKnown RBP4.06□□□□□ -1.76
USH2A-202ENST00000366942 DHRS1Q96LJ7 313 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 SFXN2Q96NB2 322 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 TAAR9Q96RI9 348 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 ALOXE3Q9BYJ1 711 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 RETREG1Q9H6L5 497 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 PPCSQ9HAB8 311 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 PRDM6Q9NQX0 595 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 NUMBLQ9Y6R0 609 aa4.06□□□□□ -1.76
USH2A-202ENST00000366942 NUDT19A8MXV4 375 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 FOXE1O00358 373 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 PDCD5O14737 125 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ANKRD28O15084 1053 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SHOXO15266 292 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 GSC2O15499 205 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 LILRB5O75023 590 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 TRIM3O75382 744 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 CXCL8P10145 99 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 RBL1P28749 1068 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SLC6A6P31641 620 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CCNG1P51959 295 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 MTTPP55157 894 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 C2orf80Q0P641 193 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 NFATC2Q13469 925 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 RFTN1Q14699 578 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 BRD3Q15059 726 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PLGLAQ15195 96 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SNAPC1Q16533 368 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SLC9B1Q4ZJI4 515 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 STPG1Q5TH74 334 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 AFTPHQ6ULP2 937 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 TFAP2DQ7Z6R9 452 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 MTDHQ86UE4 582 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 TSPYL6Q8N831 410 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PDPRQ8NCN5 879 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PMEPA1Q969W9 287 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 FCRL3Q96P31 734 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 ULBP1Q9BZM6 244 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PREBQ9HCU5 417 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 LTB4R2Q9NPC1 389 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 C20orf96Q9NUD7 363 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 SH3BP4Q9P0V3 963 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ZNF346Q9UL40 294 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 ZFR2Q9UPR6 939 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 KIAA0100Q14667 2235 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 NRXN1Q9ULB1 1477 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PSMD11O00231 422 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 LARGE1O95461 756 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 C22orf31O95567 290 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 RLN1P04808 185 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ABCB1P08183 1280 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 TKTP29401 623 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 CXCR3P49682 368 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 YPEL5P62699 121 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CYP4F8P98187 520 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PTSQ03393 145 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 NEPROQ6NW34 567 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 GPR149Q86SP6 731 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 HORMAD1Q86X24 394 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 TMEFF1Q8IYR6 380 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 FITM2Q8N6M3 262 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 NATD1Q8N6N6 113 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ENAHQ8N8S7 591 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 SLC4A11Q8NBS3 891 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 C7orf25Q9BPX7 421 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ING2Q9H160 280 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 HAUS4Q9H6D7 363 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PARPBPQ9NWS1 579 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 KLHL14Q9P2G3 628 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CDK2AP1O14519 115 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CPNE3O75131 537 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 USP12O75317 370 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 FGF1P05230 155 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 KRT4P19013 534 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 IL4RP24394 825 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PTPN7P35236 360 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SPAM1P38567 509 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 BRCC3P46736 316 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 GSK3BP49841 420 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 ADIGQ0VDE8 80 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 TRMT5Q32P41 509 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 C4orf17Q53FE4 359 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SPDYCQ5MJ68 293 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 DPY19L2P1Q6NXN4 242 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SLC39A4Q6P5W5 647 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SLC30A10Q6XR72 485 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 PIGZQ86VD9 579 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 CDR2LQ86X02 465 aaPredicted RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 ARHGAP12Q8IWW6 846 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 MRPL43Q8N983 215 aaKnown RBP4.05□□□□□ -1.76
USH2A-202ENST00000366942 ZNF610Q8N9Z0 462 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SPERTQ8NA61 448 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 GLIS3Q8NEA6 775 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 DDHD1Q8NEL9 900 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 SLC2A14Q8TDB8 520 aa4.05□□□□□ -1.76
USH2A-202ENST00000366942 TOE1Q96GM8 510 aaKnown RBP4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms