RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 CD86P42081 329 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 VAV2P52735 878 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 PPP1CAP62136 330 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 PLCL1Q15111 1095 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 HADHQ16836 314 aaKnown RBP13.55□□□□□ -0.24
VPS29-201ENST00000360579 TMTC4Q5T4D3 741 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 NCBP2-AS2Q69YL0 99 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 ZNF571Q7Z3V5 609 aaPredicted RBP13.55□□□□□ -0.24
VPS29-201ENST00000360579 TRAPPC5Q8IUR0 188 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 RBMXL3Q8N7X1 1067 aaKnown RBP13.55□□□□□ -0.24
VPS29-201ENST00000360579 GLIS1Q8NBF1 620 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 TTC13Q8NBP0 860 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 FAM71BQ8TC56 605 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 BRSK1Q8TDC3 778 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 EID2BQ96D98 161 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 TCTN2Q96GX1 697 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 VPS35Q96QK1 796 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 SRPK1Q96SB4 655 aaKnown RBP13.55□□□□□ -0.24
VPS29-201ENST00000360579 SMAD5Q99717 465 aaKnown RBP13.55□□□□□ -0.24
VPS29-201ENST00000360579 MAP3K3Q99759 626 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 NUDT9Q9BW91 350 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 NLNQ9BYT8 704 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 ISCUQ9H1K1 167 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 CHST8Q9H2A9 424 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 MAGEE1Q9HCI5 957 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 LATS2Q9NRM7 1088 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 DTLQ9NZJ0 730 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 LUZP4Q9P127 313 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 C5AR2Q9P296 337 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 IP6K2Q9UHH9 426 aa13.55□□□□□ -0.24
VPS29-201ENST00000360579 TNRC6AQ8NDV7 1962 aaKnown RBP13.54□□□□□ -0.24
VPS29-201ENST00000360579 OR5K3A6NET4 321 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 MEN1O00255 615 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 DDX3XO00571 662 aaKnown RBP eCLIP13.54□□□□□ -0.241e-8■■□□□ 11.8
VPS29-201ENST00000360579 ZNF185O15231 689 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 MTX2O75431 263 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 CBX6O95503 412 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 ELAVL4P26378 380 aaKnown RBP13.54□□□□□ -0.24
VPS29-201ENST00000360579 PRKCIP41743 596 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 MMRN1Q13201 1228 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 GPS2Q13227 327 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 ELOAQ14241 798 aaKnown RBP13.54□□□□□ -0.24
VPS29-201ENST00000360579 GALNT3Q14435 633 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 NR6A1Q15406 480 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 TMC3Q7Z5M5 1100 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 C11orf96Q7Z7L8 435 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 ENDOVQ8N8Q3 282 aaKnown RBP13.54□□□□□ -0.24
VPS29-201ENST00000360579 CPT1BQ92523 772 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 ZNF501Q96CX3 271 aaPredicted RBP13.54□□□□□ -0.24
VPS29-201ENST00000360579 TTC25Q96NG3 672 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 ZNF670Q9BS34 389 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 GPR63Q9BZJ6 419 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 ZCCHC2Q9C0B9 1178 aaKnown RBP13.54□□□□□ -0.24
VPS29-201ENST00000360579 FANCEQ9HB96 536 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 AIPL1Q9NZN9 384 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 TRIM10Q9UDY6 481 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 TCFL5Q9UL49 500 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 SHOC2Q9UQ13 582 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 WDR37Q9Y2I8 494 aa13.54□□□□□ -0.24
VPS29-201ENST00000360579 ANKUB1A6NFN9 424 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 KLHL41O60662 606 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 SLC4A1P02730 911 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 MMP2P08253 660 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 CD48P09326 243 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 SSR1P43307 286 aaKnown RBP13.53□□□□□ -0.24
VPS29-201ENST00000360579 DMPKQ09013 629 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 KLHL30Q0D2K2 578 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 TMEM115Q12893 351 aaPredicted RBP13.53□□□□□ -0.24
VPS29-201ENST00000360579 DPYSL3Q14195 570 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 RPE65Q16518 533 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 VWA5B1Q5TIE3 1220 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 ARMC6Q6NXE6 501 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 APTXQ7Z2E3 356 aaKnown RBP13.53□□□□□ -0.24
VPS29-201ENST00000360579 AMZ2Q86W34 360 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 OOSP2Q86WS3 158 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 MAP7D3Q8IWC1 876 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 DSELQ8IZU8 1212 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 CCNYQ8ND76 341 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 GDAP1Q8TB36 358 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 HDAC11Q96DB2 347 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 SNRNP40Q96DI7 357 aaKnown RBP13.53□□□□□ -0.24
VPS29-201ENST00000360579 SGSM3Q96HU1 749 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 ZNF830Q96NB3 372 aaPredicted RBP13.53□□□□□ -0.24
VPS29-201ENST00000360579 HRASLS2Q9NWW9 162 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 ANAPC7Q9UJX3 599 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 ZNF711Q9Y462 761 aa13.53□□□□□ -0.24
VPS29-201ENST00000360579 MED13Q9UHV7 2174 aa13.52□□□□□ -0.24
VPS29-201ENST00000360579 A6NL46 340 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 KRT86O43790 486 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 ALPPP05187 535 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 BPIP17213 487 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 ARSEP51690 589 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 ITGA1P56199 1179 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 PDK2Q15119 407 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 GPR19Q15760 415 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 PLEKHS1Q5SXH7 462 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 C1QL3Q5VWW1 255 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 CCDC70Q6NSX1 233 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 CERS6Q6ZMG9 384 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 RAB43Q86YS6 212 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms