RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 ALDH6A1Q02252 535 aaKnown RBP12.29□□□□□ -0.44
SNRNP48-201ENST00000342415 GPR153Q6NV75 609 aa12.29□□□□□ -0.44
SNRNP48-201ENST00000342415 CYS1Q717R9 158 aa12.29□□□□□ -0.44
SNRNP48-201ENST00000342415 TMEM174Q8WUU8 243 aa12.29□□□□□ -0.44
SNRNP48-201ENST00000342415 C3orf30Q96M34 536 aa12.29□□□□□ -0.44
SNRNP48-201ENST00000342415 LRRC3Q9BY71 257 aa12.29□□□□□ -0.44
SNRNP48-201ENST00000342415 CAPN10Q9HC96 672 aa12.29□□□□□ -0.44
SNRNP48-201ENST00000342415 POLE4Q9NR33 117 aa12.29□□□□□ -0.44
SNRNP48-201ENST00000342415 GIT1Q9Y2X7 761 aa12.29□□□□□ -0.44
SNRNP48-201ENST00000342415 ACTL7AQ9Y615 435 aa12.29□□□□□ -0.44
SNRNP48-201ENST00000342415 USP54Q70EL1 1684 aa12.29□□□□□ -0.44
SNRNP48-201ENST00000342415 PDZK1P1A8MUH7 402 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 CLDN25C9JDP6 229 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 TAF4O00268 1085 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 PLOD2O00469 737 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 XYLBO75191 536 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 SNAI1O95863 264 aaPredicted RBP12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 CAPN3P20807 821 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 SMAD3P84022 425 aaKnown RBP12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 MAP2K5Q13163 448 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 TCEA2Q15560 299 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 NANOGP8Q6NSW7 305 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 CYP20A1Q6UW02 462 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 R3HCC1LQ7Z5L2 792 aaKnown RBP12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 TMEM169Q96HH4 297 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 ACAT2Q9BWD1 397 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 HIPK3Q9H422 1215 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 NANOGQ9H9S0 305 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 TRIM43BA6NCK2 446 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 SLC22A2O15244 555 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 ARHGEF9O43307 516 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 OXTRP30559 389 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 DAG1Q14118 895 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 ZNF846Q147U1 533 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 UNC50Q53HI1 259 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 SMYD5Q6GMV2 418 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 PRR23BQ6ZRT6 265 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 NANOGNBQ7Z5D8 188 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 FAM210AQ96ND0 272 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 MIOSQ9NXC5 875 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 TRPC4Q9UBN4 977 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 FCF1Q9Y324 198 aaKnown RBP12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 ZFP37Q9Y6Q3 630 aaPredicted RBP12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 KPNA5O15131 536 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 AXIN1O15169 862 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 PQBP1O60828 265 aaKnown RBP12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 TACR2P21452 398 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 GABRB3P28472 473 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 MAPK1P28482 360 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 OR1D2P34982 312 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 GPC1P35052 558 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 GRK3P35626 688 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 SCNN1AP37088 669 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 PMS2P3Q13401 168 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 GTF2H2Q13888 395 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 GTF2H2CQ6P1K8 395 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 NPLOC4Q8TAT6 608 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 SLC13A3Q8WWT9 602 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 KCTD13Q8WZ19 329 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 CHCHD6Q9BRQ6 235 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 TMCC3Q9ULS5 477 aa12.28□□□□□ -0.44
SNRNP48-201ENST00000342415 A0A0D9SEW6 157 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 A0A1W2PP18 115 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 CXCR6O00574 342 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 NDUFS2O75306 463 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 ALPIP09923 528 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 RFX3P48380 749 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 FCGRTP55899 365 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 FAM91A1Q658Y4 838 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 C2orf73Q8N5S3 287 aaPredicted RBP12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 FEM1CQ96JP0 617 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 CGREF1Q99674 301 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 NFKBIZQ9BYH8 718 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 TNKS2Q9H2K2 1166 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 TOR3AQ9H497 397 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 CCSER2Q9H7U1 834 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 MIEF1Q9NQG6 463 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 RIMS3Q9UJD0 308 aa12.27□□□□□ -0.44
SNRNP48-201ENST00000342415 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 PSMD11O00231 422 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 ONECUT3O60422 494 aaPredicted RBP12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 PRAMEF1O95521 474 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 OR4D2P58180 307 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 EPS8Q12929 822 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 DGKKQ5KSL6 1271 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 TAPT1Q6NXT6 567 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 TXNDC11Q6PKC3 985 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 ZDHHC21Q8IVQ6 265 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 HS3ST5Q8IZT8 346 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 NSMCE3Q96MG7 304 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 SMIM14Q96QK8 99 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 NSUN3Q9H649 340 aaKnown RBP12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 ZNF696Q9H7X3 374 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 STARD7Q9NQZ5 370 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 DNMT3LQ9UJW3 386 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 GLI3P10071 1580 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 SNPHO15079 494 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 ERVK-8P63133 956 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 MYBPC3Q14896 1274 aa12.27□□□□□ -0.45
SNRNP48-201ENST00000342415 TGFBIQ15582 683 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms