RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 FMO4P31512 558 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 GP2P55259 537 aaKnown RBP22.12■■□□□ 1.13
TRIM28-202ENST00000341753 FPGSQ05932 587 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 CBX2Q14781 532 aaPredicted RBP22.12■■□□□ 1.13
TRIM28-202ENST00000341753 MAPK11Q15759 364 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 RBM48Q5RL73 367 aaKnown RBP22.12■■□□□ 1.13
TRIM28-202ENST00000341753 LAIR2Q6ISS4 152 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 CDYL2Q8N8U2 506 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 MROQ9BYG7 248 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 PTCH2Q9Y6C5 1203 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 MGEA5O60502 916 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 RHOBTB1O94844 696 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 IGLV3-25P01717 112 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 ZNF157P51786 506 aaPredicted RBP22.12■■□□□ 1.13
TRIM28-202ENST00000341753 CHRNB3Q05901 458 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 HID1Q8IV36 788 aa22.12■■□□□ 1.13
TRIM28-202ENST00000341753 M0QZ92 97 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 TNPO2O14787 897 aaKnown RBP22.11■■□□□ 1.13
TRIM28-202ENST00000341753 XPNPEP2O43895 674 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 B3GAT3O94766 335 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 ENO2P09104 434 aaPredicted RBP22.11■■□□□ 1.13
TRIM28-202ENST00000341753 PRR35P0CG20 571 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 TRIM32Q13049 653 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 KCNAB2Q13303 367 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 CRY1Q16526 586 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 FAM98BQ52LJ0 330 aaKnown RBP22.11■■□□□ 1.13
TRIM28-202ENST00000341753 SPESP1Q6UW49 350 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 NDNFQ8TB73 568 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 CDH9Q9ULB4 789 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 INVSQ9Y283 1065 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 TBC1D4O60343 1298 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 OR4F21O95013 312 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 PAPSS2O95340 614 aaPredicted RBP22.11■■□□□ 1.13
TRIM28-202ENST00000341753 ITGB1P05556 798 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 RAP2AP10114 183 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 HOXC13P31276 330 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 CD52P31358 61 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 CTF1Q16619 201 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 TMEM236Q5W0B7 351 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 SULT1C3Q6IMI6 304 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 PGBD5Q8N414 524 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 HDAC2Q92769 488 aaKnown RBP22.11■■□□□ 1.13
TRIM28-202ENST00000341753 MAGED4Q96JG8 741 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 ZNF599Q96NL3 588 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 PPP1R2P1Q96PQ5 205 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 HGH1Q9BTY7 390 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 KATNAL1Q9BW62 490 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 ALOXE3Q9BYJ1 711 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP22.11■■□□□ 1.13
TRIM28-202ENST00000341753 ENPP5Q9UJA9 477 aa22.11■■□□□ 1.13
TRIM28-202ENST00000341753 ANXA6P08133 673 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 ATXN1LP0C7T5 689 aaKnown RBP22.1■■□□□ 1.13
TRIM28-202ENST00000341753 RENBPP51606 427 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 C6orf136Q5SQH8 315 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 DLEU7Q6UYE1 221 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 FRS2Q8WU20 508 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 ISG20Q96AZ6 181 aaKnown RBP22.1■■□□□ 1.13
TRIM28-202ENST00000341753 ITPKCQ96DU7 683 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 SP110Q9HB58 689 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 HMG20AQ9NP66 347 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 DNMT3BQ9UBC3 853 aaKnown RBP22.1■■□□□ 1.13
TRIM28-202ENST00000341753 MAGEL2Q9UJ55 1249 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 TRPV2Q9Y5S1 764 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 SNX5Q9Y5X3 404 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 GPC6Q9Y625 555 aaPredicted RBP22.1■■□□□ 1.13
TRIM28-202ENST00000341753 U3KQV3 271 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 C16orf96A6NNT2 1141 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 A8MU76 341 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 GNGT2O14610 69 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 CST1P01037 141 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 CYP2C18P33260 490 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 SPATS1Q496A3 300 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 ATP6AP1LQ52LC2 224 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 CCDC92Q53HC0 331 aaPredicted RBP22.1■■□□□ 1.13
TRIM28-202ENST00000341753 PAGE2BQ5JRK9 111 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 AFMIDQ63HM1 303 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 LRRTM3Q86VH5 581 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 ZNF555Q8NEP9 628 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 CNIH3Q8TBE1 160 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 STAG3L4Q8TBR4 150 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 MUL1Q969V5 352 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 C17orf80Q9BSJ5 609 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 ARHGAP39Q9C0H5 1083 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 KLHL25Q9H0H3 589 aa22.1■■□□□ 1.13
TRIM28-202ENST00000341753 TFB2MQ9H5Q4 396 aaKnown RBP22.1■■□□□ 1.13
TRIM28-202ENST00000341753 UNCXA6NJT0 531 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 BTN3A1O00481 513 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 KERAO60938 352 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 VPS4BO75351 444 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 CARTPTQ16568 116 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 ALFQ53S48 1182 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 PIK3R6Q5UE93 754 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 DNAJC14Q6Y2X3 702 aaPredicted RBP22.09■■□□□ 1.13
TRIM28-202ENST00000341753 ATP13A3Q9H7F0 1226 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 CSNK1G1Q9HCP0 422 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 AKIP1Q9NQ31 210 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 LIMD1Q9UGP4 676 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 EIF2B4Q9UI10 523 aaKnown RBP22.09■■□□□ 1.13
TRIM28-202ENST00000341753 VPS51Q9UID3 782 aa22.09■■□□□ 1.13
TRIM28-202ENST00000341753 FNDC3AQ9Y2H6 1198 aaKnown RBP22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms