RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 HORMAD1Q86X24 394 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 LRRN4Q8WUT4 740 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 NDRG1Q92597 394 aaKnown RBP11.73□□□□□ -0.53
RTN3-203ENST00000341307 KHSRPQ92945 711 aaKnown RBP eCLIP11.73□□□□□ -0.532e-6■■□□□ 11.6
RTN3-203ENST00000341307 BCL7BQ9BQE9 202 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 MAGEB5Q9BZ81 275 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.73□□□□□ -0.53
RTN3-203ENST00000341307 RANGRFQ9HD47 186 aaPredicted RBP11.73□□□□□ -0.53
RTN3-203ENST00000341307 NGRNQ9NPE2 291 aaKnown RBP11.73□□□□□ -0.53
RTN3-203ENST00000341307 MRPL40Q9NQ50 206 aaKnown RBP11.73□□□□□ -0.53
RTN3-203ENST00000341307 SNX15Q9NRS6 342 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 SARDHQ9UL12 918 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 COPG1Q9Y678 874 aaKnown RBP11.73□□□□□ -0.53
RTN3-203ENST00000341307 MAGEB16A2A368 324 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 AGAP5A6NIR3 686 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 TPP1O14773 563 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 KRT7P08729 469 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 KCNE1P15382 129 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 TGFBR1P36897 503 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 LILRA4P59901 499 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 UBE3AQ05086 875 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 GPR50Q13585 617 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 MAPRE2Q15555 327 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 NPNTQ6UXI9 565 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 PRSS48Q7RTY5 328 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 KCTD4Q8WVF5 259 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 FBXW5Q969U6 566 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 ZNF300Q96RE9 604 aaPredicted RBP11.73□□□□□ -0.53
RTN3-203ENST00000341307 GAD1Q99259 594 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 KIFC1Q9BW19 673 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 UPF3AQ9H1J1 476 aaKnown RBP11.73□□□□□ -0.53
RTN3-203ENST00000341307 ZNF556Q9HAH1 456 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 PRDM8Q9NQV8 689 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 CHRAC1Q9NRG0 131 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 MIOSQ9NXC5 875 aa11.73□□□□□ -0.53
RTN3-203ENST00000341307 CLDN5O00501 218 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 CLEC2LP0C7M8 214 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 MPSTP25325 297 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 FASP25445 335 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 TAF6P49848 677 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 ST13P50502 369 aaKnown RBP11.72□□□□□ -0.53
RTN3-203ENST00000341307 MAPK12P53778 367 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 PLA2G4EQ3MJ16 856 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 XKR4Q5GH76 650 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 RBM48Q5RL73 367 aaKnown RBP11.72□□□□□ -0.53
RTN3-203ENST00000341307 TAF2Q6P1X5 1199 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 ARSKQ6UWY0 536 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 RFX6Q8HWS3 928 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 ZFAND1Q8TCF1 268 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 MOCOSQ96EN8 888 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 UCK2Q9BZX2 261 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 AGO3Q9H9G7 860 aaKnown RBP11.72□□□□□ -0.53
RTN3-203ENST00000341307 FANCFQ9NPI8 374 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 ZNF358Q9NW07 568 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 ASNSD1Q9NWL6 643 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 MRPL39Q9NYK5 338 aaKnown RBP11.72□□□□□ -0.53
RTN3-203ENST00000341307 OPTCQ9UBM4 332 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 OSGIN1Q9UJX0 560 aa11.72□□□□□ -0.53
RTN3-203ENST00000341307 TIMM13Q9Y5L4 95 aaPredicted RBP11.72□□□□□ -0.53
RTN3-203ENST00000341307 PDCD11Q14690 1871 aaKnown RBP11.72□□□□□ -0.53
RTN3-203ENST00000341307 H0YAE9 185 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 M0QZ92 97 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 CAPN5O15484 640 aaPredicted RBP11.71□□□□□ -0.53
RTN3-203ENST00000341307 FGF18O76093 207 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 OR5F1O95221 314 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 ASGR1P07306 291 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 DDCP20711 480 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 UGT2B10P36537 528 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 NPY2RP49146 381 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 SERPINB9P50453 376 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 CDH6P55285 790 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 IMPG1Q17R60 797 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 TBPL2Q6SJ96 375 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 MCFD2Q8NI22 146 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 SLC45A3Q96JT2 553 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 PAAF1Q9BRP4 392 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 CNPY3Q9BT09 278 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 TRAF4Q9BUZ4 470 aaPredicted RBP11.71□□□□□ -0.53
RTN3-203ENST00000341307 ING2Q9H160 280 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 TM9SF3Q9HD45 589 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 XPNPEP3Q9NQH7 507 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 PAK6Q9NQU5 681 aaPredicted RBP11.71□□□□□ -0.53
RTN3-203ENST00000341307 TAS2R9Q9NYW1 312 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.71□□□□□ -0.53
RTN3-203ENST00000341307 SLC17A6Q9P2U8 582 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 ENOPH1Q9UHY7 261 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 TEKT2Q9UIF3 430 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 TMPRSS11EQ9UL52 423 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 DHRS12A0PJE2 317 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 TRPC5OSA6NMA1 111 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 ZNF99A8MXY4 864 aaPredicted RBP11.71□□□□□ -0.53
RTN3-203ENST00000341307 GRID2O43424 1007 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 BEST1O76090 585 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 ALBP02768 609 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 CHRNGP07510 517 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 HDCP19113 662 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 OXTRP30559 389 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 THPOP40225 353 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 SLC6A3Q01959 620 aa11.71□□□□□ -0.53
RTN3-203ENST00000341307 CBLBQ13191 982 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms