RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 NXNQ6DKJ4 435 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 CLEC6AQ6EIG7 209 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 TXNDC11Q6PKC3 985 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 ZNF513Q8N8E2 541 aaPredicted RBP13.19□□□□□ -0.3
HMGB1-202ENST00000339872 DTX3LQ8TDB6 740 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 CSGALNACT1Q8TDX6 532 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 TRPC4APQ8TEL6 797 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 DTD2Q96FN9 168 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 ASB2Q96Q27 587 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 FAM126AQ9BYI3 521 aaPredicted RBP13.19□□□□□ -0.3
HMGB1-202ENST00000339872 LATS2Q9NRM7 1088 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 TRAF6Q9Y4K3 522 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 UNC80Q8N2C7 3258 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 PPP6CO00743 305 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 AREL1O15033 823 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 RPS17P08708 135 aaKnown RBP13.19□□□□□ -0.3
HMGB1-202ENST00000339872 CPA2P48052 419 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 SEC13P55735 322 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 SH3BP2P78314 561 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 CLCQ05315 142 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 BTKQ06187 659 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 KHDC1Q4VXA5 237 aaKnown RBP13.19□□□□□ -0.3
HMGB1-202ENST00000339872 ZNF648Q5T619 568 aaPredicted RBP13.19□□□□□ -0.3
HMGB1-202ENST00000339872 FAM219BQ5XKK7 198 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 ERN2Q76MJ5 926 aaKnown RBP13.19□□□□□ -0.3
HMGB1-202ENST00000339872 NRSN1Q8IZ57 195 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 DDHD1Q8NEL9 900 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 ESAMQ96AP7 390 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 COQ10AQ96MF6 247 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 NECTIN4Q96NY8 510 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 ZMYND15Q9H091 742 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 MID1IP1Q9NPA3 183 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 SEMA4BQ9NPR2 832 aaPredicted RBP13.19□□□□□ -0.3
HMGB1-202ENST00000339872 EPS15L1Q9UBC2 864 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 ADAMTS6Q9UKP5 1117 aa13.19□□□□□ -0.3
HMGB1-202ENST00000339872 TNRC18O15417 2968 aaPredicted RBP13.19□□□□□ -0.3
HMGB1-202ENST00000339872 DCXO43602 365 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 CDK14O94921 469 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 S100BP04271 92 aaPredicted RBP13.18□□□□□ -0.3
HMGB1-202ENST00000339872 KRT16P08779 473 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 C6P13671 934 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 AOC1P19801 751 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 IGFBP4P22692 258 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 PTPN4P29074 926 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 P2RY2P41231 377 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 GALK1P51570 392 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 LCP2Q13094 533 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 BOP1Q14137 746 aaKnown RBP13.18□□□□□ -0.3
HMGB1-202ENST00000339872 PPP1R3AQ16821 1122 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 METTL21CQ5VZV1 264 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 KIRREL3Q8IZU9 778 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 BTN2A2Q8WVV5 523 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 GLYATL1Q969I3 302 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 P2RY13Q9BPV8 354 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 EIF2B4Q9UI10 523 aaKnown RBP13.18□□□□□ -0.3
HMGB1-202ENST00000339872 TAGLN3Q9UI15 199 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 PCTPQ9UKL6 214 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 STK38LQ9Y2H1 464 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 CKAP5Q14008 2032 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 OR2AG2A6NM03 316 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 SDHDO14521 159 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 RAD51BO15315 384 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 INPP4BO15327 924 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 FFAR2O15552 330 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 MMP20O60882 483 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 RECQL5O94762 991 aaPredicted RBP13.18□□□□□ -0.3
HMGB1-202ENST00000339872 GUCA1CO95843 209 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 CBSLP0DN79 551 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 CBSP35520 551 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 HSPA14Q0VDF9 509 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 CNTN1Q12860 1018 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 ADGRE1Q14246 886 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 CRY1Q16526 586 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 FBXW10Q5XX13 1052 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 STON2Q8WXE9 905 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 NUS1Q96E22 293 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 VPS35Q96QK1 796 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 CCDC28BQ9BUN5 200 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 C1QTNF3Q9BXJ4 246 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 TTYH1Q9H313 450 aaPredicted RBP13.18□□□□□ -0.3
HMGB1-202ENST00000339872 G3BP2Q9UN86 482 aaKnown RBP13.18□□□□□ -0.3
HMGB1-202ENST00000339872 OARD1Q9Y530 152 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 ASB1Q9Y576 335 aa13.18□□□□□ -0.3
HMGB1-202ENST00000339872 LZTS3O60299 673 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-202ENST00000339872 AOAHP28039 575 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 TIE1P35590 1138 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 PHKG1Q16816 387 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 AAK1Q2M2I8 961 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 LDLRAP1Q5SW96 308 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 FAM46CQ5VWP2 391 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 RINLQ6ZS11 566 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 CYP2U1Q7Z449 544 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 BEND7Q8N7W2 519 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-202ENST00000339872 AGAP11Q8TF27 550 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 ZNF483Q8TF39 744 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-202ENST00000339872 MAELQ96JY0 434 aaKnown RBP13.17□□□□□ -0.3
HMGB1-202ENST00000339872 KLHL42Q9P2K6 505 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 ATG2BQ96BY7 2078 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 EYSQ5T1H1 3165 aa13.17□□□□□ -0.3
HMGB1-202ENST00000339872 ANHXE9PGG2 379 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms