RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ZFHX3Q15911 3703 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 GFRA2O00451 464 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 DEAF1O75398 565 aaPredicted RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 HSPA4LO95757 839 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 PFKMP08237 780 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 CHMP24386 653 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 STAT5BP51692 787 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 TNK1Q13470 666 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 SYT6Q5T7P8 510 aaPredicted RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 TDRD10Q5VZ19 366 aaKnown RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 PTRH1Q86Y79 214 aaKnown RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 GATAD2AQ86YP4 633 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 CCDC185Q8N715 623 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 POC5Q8NA72 575 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 MAGEE2Q8TD90 523 aaPredicted RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 RPL3LQ92901 407 aaKnown RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 ACCSQ96QU6 501 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 KCTD14Q9BQ13 255 aaPredicted RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 DGCR6LQ9BY27 220 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 ILKAPQ9H0C8 392 aaPredicted RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 CMTM6Q9NX76 183 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 GTSE1Q9NYZ3 720 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 BAG5Q9UL15 447 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 MAGED1Q9Y5V3 778 aaPredicted RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 KLF2Q9Y5W3 355 aaPredicted RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 E2F8A0AVK6 867 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 A8MV72 311 aaPredicted RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 ATP6V1G2-DDX39BF2Z307 99 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 TRIM13O60858 407 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 ATG13O75143 517 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 MFN2O95140 757 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 TFE3P19532 575 aaPredicted RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 TPSB2P20231 275 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 PTGS2P35354 604 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 TFAMQ00059 246 aaKnown RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 FCHO2Q0JRZ9 810 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 EFR3AQ14156 821 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 TPSAB1Q15661 275 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 GLRA4Q5JXX5 417 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 SAMD4BQ5PRF9 694 aaKnown RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 TRNP1Q6NT89 227 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 ZNF544Q6NX49 715 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 PNCKQ6P2M8 343 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 NOXA1Q86UR1 476 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 TMEM151BQ8IW70 566 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 GALNT6Q8NCL4 622 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 OR7A2PQ8NGA2 310 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 LRRN4Q8WUT4 740 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 DEPDC1BQ8WUY9 529 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 ZNF606Q8WXB4 792 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 BADQ92934 168 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 SNAPC3Q92966 411 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 PPWD1Q96BP3 646 aaKnown RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 CCDC120Q96HB5 630 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 CPB2Q96IY4 423 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 PGLYRP2Q96PD5 576 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 NEDD4LQ96PU5 975 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 DEPDC7Q96QD5 511 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 FYTTD1Q96QD9 318 aaKnown RBP5.53□□□□□ -1.52
CSDE1-202ENST00000339438 OR2A14Q96R47 310 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 CITED4Q96RK1 184 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 TRIM39Q9HCM9 518 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 IL20Q9NYY1 176 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 CLEC1BQ9P126 229 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 ACTR3BQ9P1U1 418 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 PCDHA9Q9Y5H5 950 aa5.53□□□□□ -1.52
CSDE1-202ENST00000339438 BCLAF3A2AJT9 711 aaKnown RBP5.52□□□□□ -1.53
CSDE1-202ENST00000339438 ZNF99A8MXY4 864 aaPredicted RBP5.52□□□□□ -1.53
CSDE1-202ENST00000339438 ARNTLO00327 626 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 TSPAN9O75954 239 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 SNX4O95219 450 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 PIGNO95427 931 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 FASP25445 335 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 GNA15P30679 374 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 CBX5P45973 191 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 ZFP36L2P47974 494 aaKnown RBP5.52□□□□□ -1.53
CSDE1-202ENST00000339438 CLCN3P51790 818 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 SLC7A2P52569 658 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 DEFB103AP81534 67 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 ROR1Q01973 937 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 TLE2Q04725 743 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 RAD51Q06609 339 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 SLAMF1Q13291 335 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 MEP1AQ16819 746 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 DGUOKQ16854 277 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 AAK1Q2M2I8 961 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 ZACNQ401N2 412 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 ZFP69Q49AA0 526 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 ZBTB41Q5SVQ8 909 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 SMYD5Q6GMV2 418 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 FAM35AQ86V20 835 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 PIAS4Q8N2W9 510 aaPredicted RBP5.52□□□□□ -1.53
CSDE1-202ENST00000339438 ANKRD52Q8NB46 1076 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 GLB1L3Q8NCI6 653 aaPredicted RBP5.52□□□□□ -1.53
CSDE1-202ENST00000339438 ZFAND1Q8TCF1 268 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 WBP1Q96G27 269 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 GPR78Q96P69 363 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 ROGDIQ9GZN7 287 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 DNAI2Q9GZS0 605 aa5.52□□□□□ -1.53
CSDE1-202ENST00000339438 MRPL40Q9NQ50 206 aaKnown RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms