RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 TUBB3Q13509 450 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 PON2Q15165 354 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 PFKFB4Q16877 469 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 SBSNQ6UWP8 590 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 CYHR1Q6ZMK1 362 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 RAB44Q7Z6P3 723 aaPredicted RBP15.24■□□□□ 0.03
LIMS1-202ENST00000338045 CLNKQ7Z7G1 428 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 GPSM1Q86YR5 675 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 MYO1HQ8N1T3 1032 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 FBXO39Q8N4B4 442 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 IL17RCQ8NAC3 791 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 FAM131CQ96AQ9 280 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 ERLEC1Q96DZ1 483 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 FBRSQ9HAH7 460 aa15.24■□□□□ 0.03
LIMS1-202ENST00000338045 CNOT6Q9ULM6 557 aaKnown RBP15.24■□□□□ 0.03
LIMS1-202ENST00000338045 RRP15Q9Y3B9 282 aaKnown RBP15.24■□□□□ 0.03
LIMS1-202ENST00000338045 ANKRD65E5RJM6 399 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 HGSO14964 777 aaPredicted RBP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 HDAC3O15379 428 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 ADAM23O75077 832 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 ENO3P13929 434 aaPredicted RBP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 MSH3P20585 1137 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 RPS14P62263 151 aaKnown RBP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 TGFBIQ15582 683 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 PPP1R3AQ16821 1122 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 FAM91A1Q658Y4 838 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 ZNF776Q68DI1 518 aaPredicted RBP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 KIAA1211LQ6NV74 962 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 EPGNQ6UW88 154 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 PELI3Q8N2H9 469 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 CXorf40AQ8TE69 158 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 COG4Q9H9E3 785 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 ACTR5Q9H9F9 607 aaPredicted RBP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 EML4Q9HC35 981 aaKnown RBP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 CD248Q9HCU0 757 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 VTI1BQ9UEU0 232 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 ZFP69BQ9UJL9 534 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 GRID2O43424 1007 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 TSPAN6O43657 245 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 LZTS3O60299 673 aaPredicted RBP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 SUPT7LO94864 414 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 SIX3O95343 332 aaPredicted RBP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 RPS17P08708 135 aaKnown RBP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 GLULP15104 373 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 ALDH18A1P54886 795 aaKnown RBP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 CORO7P57737 925 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 NAA20P61599 178 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 GRSF1Q12849 480 aaKnown RBP eCLIP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 DET1Q7L5Y6 550 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 ALYREFQ86V81 257 aaKnown RBP15.23■□□□□ 0.03
LIMS1-202ENST00000338045 PHYKPLQ8IUZ5 450 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 MAPK15Q8TD08 544 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 LRCH3Q96II8 777 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 ASB2Q96Q27 587 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 NUDT4Q9NZJ9 180 aa15.23■□□□□ 0.03
LIMS1-202ENST00000338045 A0A1W2PQF6 199 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 KPNA5O15131 536 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 NUAK1O60285 661 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 SCTRP47872 440 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 MRPS21P82921 87 aaKnown RBP15.22■□□□□ 0.03
LIMS1-202ENST00000338045 ZBTB16Q05516 673 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 TMEM115Q12893 351 aaPredicted RBP15.22■□□□□ 0.03
LIMS1-202ENST00000338045 STARD3Q14849 445 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 PLEKHS1Q5SXH7 462 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 SEL1L3Q68CR1 1132 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 SDE2Q6IQ49 451 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 RPS27LQ71UM5 84 aaKnown RBP15.22■□□□□ 0.03
LIMS1-202ENST00000338045 TRMT11Q7Z4G4 463 aaKnown RBP15.22■□□□□ 0.03
LIMS1-202ENST00000338045 CUZD1Q86UP6 607 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 KIRREL3Q8IZU9 778 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 AGR3Q8TD06 166 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 NMUR2Q9GZQ4 415 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 MKRN2Q9H000 416 aaKnown RBP15.22■□□□□ 0.03
LIMS1-202ENST00000338045 EPHX3Q9H6B9 360 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 SERGEFQ9UGK8 458 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 APOBEC2Q9Y235 224 aaKnown RBP15.22■□□□□ 0.03
LIMS1-202ENST00000338045 OARD1Q9Y530 152 aa15.22■□□□□ 0.03
LIMS1-202ENST00000338045 SHISA7A6NL88 538 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 K7ESM1 405 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 FCHO1O14526 889 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 UBFD1O14562 309 aaKnown RBP15.21■□□□□ 0.03
LIMS1-202ENST00000338045 FTH1P02794 183 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 SERPINA6P08185 405 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 PRLHRP49683 370 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 AGERQ15109 404 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 IER5LQ5T953 404 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 VWA5B1Q5TIE3 1220 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.21■□□□□ 0.03
LIMS1-202ENST00000338045 HDDC3Q8N4P3 179 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 RASGEF1AQ8N9B8 481 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 PDPRQ8NCN5 879 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 MSANTD3Q96H12 275 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 RILPQ96NA2 401 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 FAM126AQ9BYI3 521 aaPredicted RBP15.21■□□□□ 0.03
LIMS1-202ENST00000338045 SHCBP1LQ9BZQ2 653 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 SAR1AQ9NR31 198 aa15.21■□□□□ 0.03
LIMS1-202ENST00000338045 A0A1W2PP55 124 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 LRRC14BA6NHZ5 514 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 CCDC22O60826 627 aa15.2■□□□□ 0.02
LIMS1-202ENST00000338045 KLF8O95600 359 aaPredicted RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms