RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 IRAK1P51617 712 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 NPEPPSP55786 919 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CARD18P57730 90 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 RUNX2Q13950 521 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 RASA2Q15283 850 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 STK11Q15831 433 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CDONQ4KMG0 1287 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 PDZD11Q5EBL8 140 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 METTL11BQ5VVY1 283 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC2A7Q6PXP3 512 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 C11orf57Q6ZUT1 292 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 HFE2Q6ZVN8 426 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 NCCRP1Q6ZVX7 275 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 PLD6Q8N2A8 252 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 OR8S1Q8NH09 359 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 TPCN2Q8NHX9 752 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 SPATA13Q96N96 652 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 ACCSQ96QU6 501 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 GAL3ST4Q96RP7 486 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 TWNKQ96RR1 684 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 TMEM121Q9BTD3 319 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CCDC32Q9BV29 185 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 PBDC1Q9BVG4 233 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 QTRT2Q9H974 415 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 RPF1Q9H9Y2 349 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 PCDHB16Q9NRJ7 776 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 MAGEL2Q9UJ55 1249 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 MIF4GDA9UHW6 222 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 E7EQ34 232 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC7A4O43246 635 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 HCN1O60741 890 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 PRAMEF1O95521 474 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CYP11A1P05108 521 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 TFPIP10646 304 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 TSFMP43897 325 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 RXRGP48443 463 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 LIMK1P53667 647 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 INPP5JQ15735 1006 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 FAM199XQ6PEV8 388 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CRTC3Q6UUV7 619 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 FAM185AQ8N0U4 392 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 KLHDC1Q8N7A1 406 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 C9orf72Q96LT7 481 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 NPAS2Q99743 824 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 C11orf70Q9BRQ4 267 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 HTATIP2Q9BUP3 242 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 TCEAL2Q9H3H9 227 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 RNF121Q9H920 327 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 TBC1D17Q9HA65 648 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 EIF2B3Q9NR50 452 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 LRRC4BQ9NT99 713 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 COMMD3Q9UBI1 195 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 POLA1P09884 1462 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 SRPRAP08240 638 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 HLCSP50747 726 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CLCN7P51798 805 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 HNRNPA3P51991 378 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 HUNKP57058 714 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 ANTXR2P58335 489 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC13A2Q13183 592 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 RAB31Q13636 194 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 PTPRNQ16849 979 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 PLAC9Q5JTB6 97 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 THEM4Q5T1C6 240 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF836Q6ZNA1 936 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 PGAM4Q8N0Y7 254 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 OR5B17Q8NGF7 314 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 DAZAP1Q96EP5 407 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 UBXN10Q96LJ8 280 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 USB1Q9BQ65 265 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 AARSD1Q9BTE6 412 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC35D1Q9NTN3 355 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 TRHDEQ9UKU6 1024 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 C15orf41Q9Y2V0 281 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 F5H0A9 414 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 PDYNP01213 254 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 C8AP07357 584 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 TRAPPC2P0DI81 140 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 TRAPPC2BP0DI82 140 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 HLA-DOBP13765 273 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CCNFP41002 786 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CCNG1P51959 295 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 JAK3P52333 1124 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 ARSFP54793 590 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 USP41Q3LFD5 358 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CDNFQ49AH0 187 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 UBE2NLQ5JXB2 153 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 NUDT18Q6ZVK8 323 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 WDR53Q7Z5U6 358 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 SERPINA9Q86WD7 417 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 OR6Q1Q8NGQ2 317 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 OR10R2Q8NGX6 335 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 MR1Q95460 341 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 QRFPRQ96P65 431 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 SRRQ9GZT4 340 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 ACTL8Q9H568 366 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 UBP1Q9NZI7 540 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 KIAA1024Q9UPX6 916 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 A0A0A6YYJ9 748 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms