RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 RNASEH2BQ5TBB1 312 aaKnown RBP13.74□□□□□ -0.21
CSPG4-201ENST00000308508 KLHDC10Q6PID8 442 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 IQCKQ8N0W5 287 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 SENP8Q96LD8 212 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 C5orf34Q96MH7 638 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 TSSK3Q96PN8 268 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 ASF1AQ9Y294 204 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 ISM1B1AKI9 464 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 TOR1BO14657 336 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 PAPSS1O43252 624 aaPredicted RBP13.74□□□□□ -0.21
CSPG4-201ENST00000308508 ZBTB7AO95365 584 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 RFX5P48382 616 aaPredicted RBP13.74□□□□□ -0.21
CSPG4-201ENST00000308508 MMP14P50281 582 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 PRR5P85299 388 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 PTPN20Q4JDL3 420 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 CRYBG2Q8N1P7 616 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 UROC1Q96N76 676 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 LGMNQ99538 433 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 RPL36Q9Y3U8 105 aaKnown RBP13.74□□□□□ -0.21
CSPG4-201ENST00000308508 KERAO60938 352 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 PCBP1Q15365 356 aaKnown RBP eCLIP13.74□□□□□ -0.21
CSPG4-201ENST00000308508 FAM151BQ6UXP7 276 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 DGLUCYQ7Z3D6 616 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 ACER1Q8TDN7 264 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 CALML5Q9NZT1 146 aa13.74□□□□□ -0.21
CSPG4-201ENST00000308508 ACOX3O15254 700 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 ITGB1P05556 798 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 COL6A1P12109 1028 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 PGAM2P15259 253 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 PVALBP20472 110 aaPredicted RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 ZNF132P52740 706 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 LY6KQ17RY6 165 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 IQCCQ4KMZ1 466 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 CIR1Q86X95 450 aaPredicted RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 BEND7Q8N7W2 519 aaPredicted RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 C9orf43Q8TAL5 461 aaPredicted RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 LNX1Q8TBB1 728 aaPredicted RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 TMPRSS4Q9NRS4 437 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 NUDT15Q9NV35 164 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 KAT7O95251 611 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 RAP2AP10114 183 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 CD36P16671 472 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 KHDC1Q4VXA5 237 aaKnown RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 VWA5B1Q5TIE3 1220 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 SLC26A9Q7LBE3 791 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 TMPRSS11BQ86T26 416 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 XAGE5Q8WWM1 108 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 GTPBP3Q969Y2 492 aaKnown RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 DNAAF2Q9NVR5 837 aaKnown RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 POLR3BQ9NW08 1133 aaPredicted RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 MRPL42Q9Y6G3 142 aaKnown RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 RECQL4O94761 1208 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 GRM3Q14832 879 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 SGCDQ92629 289 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 CNDP2Q96KP4 475 aaKnown RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 PORCNQ9H237 461 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 RDH8Q9NYR8 311 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 TBC1D3BA6NDS4 549 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 MATKP42679 507 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 TRIM43Q96BQ3 446 aaPredicted RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 TIFAQ96CG3 184 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 KXD1Q9BQD3 176 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 MED31Q9Y3C7 131 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 SLC25A14O95258 325 aaPredicted RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 LAPTM5Q13571 262 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 HECTD2Q5U5R9 776 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 XKRXQ6PP77 449 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 ADGRG6Q86SQ4 1221 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 CCDC28AQ8IWP9 274 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 RASGEF1CQ8N431 466 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 SLC39A3Q9BRY0 314 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 GTPBP2Q9BX10 602 aaKnown RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 COQ10BQ9H8M1 238 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 AGO1Q9UL18 857 aaKnown RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 FRMPD1Q5SYB0 1578 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 FMO1Q01740 532 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 ZDHHC21Q8IVQ6 265 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 ZSCAN5AQ9BUG6 496 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 AGXT2Q9BYV1 514 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 FAM149AA5PLN7 773 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 CDK18Q07002 472 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 HAGHLQ6PII5 290 aaPredicted RBP13.73□□□□□ -0.21
CSPG4-201ENST00000308508 LRRC70Q7Z2Q7 622 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 PHC3Q8NDX5 983 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 OR2L2Q8NH16 312 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 MFSD14AQ96MC6 490 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 AGAP2Q99490 1192 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 PDCD2LQ9BRP1 358 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 DPAGT1Q9H3H5 408 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 STARD7Q9NQZ5 370 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 KCTD5Q9NXV2 234 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 NUDT4Q9NZJ9 180 aa13.73□□□□□ -0.21
CSPG4-201ENST00000308508 DLC1Q96QB1 1528 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 IFNA21P01568 189 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 C2P06681 752 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 PAX3P23760 479 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 GMPSP49915 693 aaPredicted RBP13.72□□□□□ -0.21
CSPG4-201ENST00000308508 CDH12P55289 794 aa13.72□□□□□ -0.21
CSPG4-201ENST00000308508 RPL26P61254 145 aaKnown RBP13.72□□□□□ -0.21
CSPG4-201ENST00000308508 ZBED5Q49AG3 693 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms