RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 FAM172BPA6NC97 362 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 DYRK3O43781 588 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 RFPL2O75678 378 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 PGAM1P18669 254 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 ATP6V1B2P21281 511 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 OR1E1P30953 314 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 HLCSP50747 726 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 IL5RAQ01344 420 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 CDH18Q13634 790 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 LIPMQ5VYY2 423 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 TXNDC8Q6A555 127 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 PCDH19Q8TAB3 1148 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 OMDQ99983 421 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 TMEM246Q9BRR3 403 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 NKX2-4Q9H2Z4 354 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 TRIT1Q9H3H1 467 aaKnown RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 EPS8L2Q9H6S3 715 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 TCRBV5S1A1TA0A578 114 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 TIMM44O43615 452 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 ICMTO60725 284 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 JCHAINP01591 159 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 MPOP05164 745 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 HNRNPLP14866 589 aaKnown RBP eCLIP10.79□□□□□ -0.68
LSM3-201ENST00000306024 AIF1P55008 147 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 MPP1Q00013 466 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 SLC10A2Q12908 348 aaPredicted RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 TRAP1Q12931 704 aaKnown RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 FAM209AQ5JX71 171 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 GPR158Q5T848 1215 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 PM20D1Q6GTS8 502 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 BTLAQ7Z6A9 289 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 CAND1Q86VP6 1230 aaKnown RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 DEPDC4Q8N2C3 294 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 PLD5Q8N7P1 536 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 ZHX1-C8orf76Q96EF9 292 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 BTN2A3PQ96KV6 586 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 TUBA1CQ9BQE3 449 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 MAGEB5Q9BZ81 275 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 LHPPQ9H008 270 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 PRDM12Q9H4Q4 367 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 EML4Q9HC35 981 aaKnown RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 KLQ9UEF7 1012 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 IPO11Q9UI26 975 aaKnown RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 BTBD3Q9Y2F9 522 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 A8MV72 311 aaPredicted RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 KMOO15229 486 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 GRM6O15303 877 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 MED26O95402 600 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 SNAP29O95721 258 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 RB1P06400 928 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 PCNAP12004 261 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 PTPN7P35236 360 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 NR2C2P49116 596 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 ZNF135P52742 658 aaPredicted RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 ERVFC1P60507 584 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 SLC12A1Q13621 1099 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 MRPL58Q14197 206 aaKnown RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 ZNF235Q14590 738 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 TRIP4Q15650 581 aaPredicted RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 DPYSL2Q16555 572 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 FAM83EQ2M2I3 478 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 COL13A1Q5TAT6 717 aaPredicted RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 NEK10Q6ZWH5 1172 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 THAP5Q7Z6K1 395 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 PSTKQ8IV42 348 aaKnown RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 GALNT12Q8IXK2 581 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 SCML4Q8N228 414 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 CARNMT1Q8N4J0 409 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 ARFGAP1Q8N6T3 406 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 CERS2Q96G23 380 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 KLHL5Q96PQ7 755 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 SMOC2Q9H3U7 446 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 C12orf4Q9NQ89 552 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 IARS2Q9NSE4 1012 aaKnown RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 PSAT1Q9Y617 370 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 SCN5AQ14524 2016 aa10.79□□□□□ -0.68
LSM3-201ENST00000306024 TDRD15B5MCY1 1934 aaKnown RBP10.79□□□□□ -0.68
LSM3-201ENST00000306024 PRORSD1PA6NEY8 169 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 AGRPO00253 132 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 NDUFS2O75306 463 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 SERPINI2O75830 405 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 DBTP11182 482 aaKnown RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 IL7RP16871 459 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 PIGFQ07326 219 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 SQLEQ14534 574 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 NHSL2Q5HYW2 709 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 RAB41Q5JT25 222 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 STXBP5Q5T5C0 1151 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 TMEM236Q5W0B7 351 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 TIFABQ6ZNK6 161 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 KDELC2Q7Z4H8 507 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 SCD5Q86SK9 330 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 CFAP52Q8N1V2 620 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 ADAMTS16Q8TE57 1224 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 NXNL1Q96CM4 212 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 LGMNQ99538 433 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 FUNDC2Q9BWH2 189 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 CRISPLD1Q9H336 500 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 EMCNQ9ULC0 261 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 TMEM233B4DJY2 109 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms