RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PRKCQQ04759 706 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 ATP6AP1LQ52LC2 224 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 METTL25Q8N6Q8 603 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 OR4F6Q8NGB9 312 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 ZNF382Q96SR6 550 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 UHRF1Q96T88 793 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 TRIM4Q9C037 500 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 IL26Q9NPH9 171 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 RNF11Q9Y3C5 154 aa18.11■□□□□ 0.49
SHKBP1-201ENST00000291842 MICAL3Q7RTP6 2002 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 OR7A17O14581 309 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 SLC25A14O95258 325 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 HSD17B1P14061 328 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 GJA1P17302 382 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 HNF1BP35680 557 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 PIK3CGP48736 1102 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 BCL2L1Q07817 233 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 KIAA2013Q8IYS2 634 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 DCAF4L2Q8NA75 395 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 PROKR1Q8TCW9 393 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 ZUFSPQ96AP4 578 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 SLC2A11Q9BYW1 496 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 CCM2LQ9NUG4 571 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 NUDT4Q9NZJ9 180 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 DNMT3BQ9UBC3 853 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 PLXNA4Q9HCM2 1894 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 INPP4BO15327 924 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 FFAR2O15552 330 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 GSK3BP49841 420 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 CREB5Q02930 508 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 LIPEQ05469 1076 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 NFATC2Q13469 925 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 GTF2H2Q13888 395 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 GTF2H2CQ6P1K8 395 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 SLC2A7Q6PXP3 512 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 Q6ZNB5 142 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 EFL1Q7Z2Z2 1120 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 CHERPQ8IWX8 916 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 AHI1Q8N157 1196 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 ZNF558Q96NG5 402 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 TMEM79Q9BSE2 394 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 BRINP2Q9C0B6 783 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 ALG2Q9H553 416 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 IL21Q9HBE4 155 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 RIC8BQ9NVN3 520 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 ARMC1Q9NVT9 282 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 ELOVL2Q9NXB9 296 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 TRIM17Q9Y577 477 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 V9GYQ6 96 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 PDE4DIPQ5VU43 2346 aa18.1■□□□□ 0.49
SHKBP1-201ENST00000291842 ARHGAP10A1A4S6 786 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 PLOD2O00469 737 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 NRG2O14511 850 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 URODP06132 367 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 CKMP06732 381 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 ZNF7P17097 686 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 AP1S1P61966 158 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 IRX1P78414 480 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 TLE2Q04725 743 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 RAB33AQ14088 237 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 ABRAXAS2Q15018 415 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 ERMP1Q7Z2K6 904 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 TSPAN33Q86UF1 283 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 ZSWIM9Q86XI8 627 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 BBS7Q8IWZ6 715 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 SLC39A11Q8N1S5 342 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 TMEM199Q8N511 208 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 NMD3Q96D46 503 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 KCTD14Q9BQ13 255 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 C2orf49Q9BVC5 232 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 IPPKQ9H8X2 491 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 ACTR3BQ9P1U1 418 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 HSFX1Q9UBD0 423 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 SUN2Q9UH99 717 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 TRBC1P01850 177 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 G6PDP11413 515 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 GABRR2P28476 465 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 CD70P32970 193 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 NR6A1Q15406 480 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 CHRNA6Q15825 494 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 PHKG1Q16816 387 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 CYP51A1Q16850 503 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 TRIM60Q495X7 471 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 NADK2Q4G0N4 442 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 RETSATQ6NUM9 610 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 HS6ST3Q8IZP7 471 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 EGFL8Q99944 293 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 SMG9Q9H0W8 520 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 CFAP97Q9P2B7 532 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 PCDHB1Q9Y5F3 818 aa18.09■□□□□ 0.49
SHKBP1-201ENST00000291842 FFAR3O14843 346 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 GPR42O15529 346 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 HTRA2O43464 458 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 EEDO75530 441 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 GNRH1P01148 92 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 MT-ND1P03886 318 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 S100BP04271 92 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 BPIP17213 487 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 PSMA4P25789 261 aaKnown RBP18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms