RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 CDH4P55283 916 aa11.36□□□□□ -0.59
USP53-201ENST00000274030 ZNF155Q12901 538 aaPredicted RBP11.36□□□□□ -0.59
USP53-201ENST00000274030 REP15Q6BDI9 236 aa11.36□□□□□ -0.59
USP53-201ENST00000274030 CROCCP3Q8IVE0 287 aa11.36□□□□□ -0.59
USP53-201ENST00000274030 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.36□□□□□ -0.59
USP53-201ENST00000274030 FSTL5Q8N475 847 aaPredicted RBP11.36□□□□□ -0.59
USP53-201ENST00000274030 LIX1Q8N485 282 aa11.36□□□□□ -0.59
USP53-201ENST00000274030 COX4I2Q96KJ9 171 aa11.36□□□□□ -0.59
USP53-201ENST00000274030 TSPAN18Q96SJ8 248 aa11.36□□□□□ -0.59
USP53-201ENST00000274030 PRDM8Q9NQV8 689 aa11.36□□□□□ -0.59
USP53-201ENST00000274030 PHF11Q9UIL8 331 aa11.36□□□□□ -0.59
USP53-201ENST00000274030 NOCTQ9UK39 431 aaKnown RBP11.36□□□□□ -0.59
USP53-201ENST00000274030 OR51F1A6NGY5 319 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 TGDSO95455 350 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 RBBP4Q09028 425 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 TRAP1Q12931 704 aaKnown RBP11.35□□□□□ -0.59
USP53-201ENST00000274030 PIK3R6Q5UE93 754 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 OLFML2AQ68BL7 652 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 KCT2Q8NC54 265 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 OR10A6Q8NH74 314 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 CTPS2Q9NRF8 586 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 TNFRSF11BO00300 401 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 CDH3P22223 829 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 IGFALSP35858 605 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 PLA2G16P53816 162 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 LCP2Q13094 533 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 CARTPTQ16568 116 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 FAM131AQ6UXB0 335 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 MCFD2Q8NI22 146 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 ATRNO75882 1429 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 GLTPD2A6NH11 291 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 LOC110117498-PIK3R3F6TDL0 507 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 SAP18O00422 153 aaKnown RBP11.35□□□□□ -0.59
USP53-201ENST00000274030 AXIN1O15169 862 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 TM7SF2O76062 418 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 NFATC1O95644 943 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 TAS2R39P59534 338 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 SLC20A2Q08357 652 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 ATAT1Q5SQI0 421 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 MFSD5Q6N075 450 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 KLHL35Q6PF15 583 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 CERS6Q6ZMG9 384 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 OR10H5Q8NGA6 315 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 GTPBP3Q969Y2 492 aaKnown RBP11.35□□□□□ -0.59
USP53-201ENST00000274030 CEP295NLQ96MC4 621 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 HTATIP2Q9BUP3 242 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 TMLHEQ9NVH6 421 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 DTLQ9NZJ0 730 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 WRAP73Q9P2S5 460 aaPredicted RBP11.35□□□□□ -0.59
USP53-201ENST00000274030 RAPGEFL1Q9UHV5 662 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 A0A0G2JN53 185 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 TEX28O15482 410 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 PLIN3O60664 434 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 RGS8P57771 180 aaPredicted RBP11.35□□□□□ -0.59
USP53-201ENST00000274030 ELP6Q0PNE2 266 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 IL18R1Q13478 541 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 NEK5Q6P3R8 708 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 CBR4Q8N4T8 237 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 HTRA1Q92743 480 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 AJAP1Q9UKB5 411 aaPredicted RBP11.35□□□□□ -0.59
USP53-201ENST00000274030 TESMINQ9Y4I5 508 aa11.35□□□□□ -0.59
USP53-201ENST00000274030 STX16-NPEPL1H3BU86 382 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 STX16O14662 325 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 BCKDKO14874 412 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 IFNGP01579 166 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 C9P02748 559 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 PRNPP04156 253 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 SEPHS1P49903 392 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 ACAP2Q15057 778 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 GCNT6Q5T4J0 391 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 AHSA2Q719I0 299 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 FBXO22Q8NEZ5 403 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 PTCD2Q8WV60 388 aaKnown RBP11.34□□□□□ -0.59
USP53-201ENST00000274030 IRGQQ8WZA9 623 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 CCDC177Q9NQR7 707 aaPredicted RBP11.34□□□□□ -0.59
USP53-201ENST00000274030 ABCB8Q9NUT2 735 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 FZD10Q9ULW2 581 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 FAM86C2PA6NEL3 165 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 AP2A2O94973 939 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 ITGA3P26006 1051 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 ERVK-21P61565 698 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 RPS24P62847 133 aaKnown RBP11.34□□□□□ -0.59
USP53-201ENST00000274030 SYPL2Q5VXT5 272 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 SPRYD7Q5W111 196 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 MED27Q6P2C8 311 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 BEND5Q7L4P6 421 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 NPAS4Q8IUM7 802 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 TCAIMQ8N3R3 496 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 UBR7Q8N806 425 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 ARNTL2Q8WYA1 636 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 LRTOMTQ8WZ04 291 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 GAL3ST4Q96RP7 486 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 MTERF1Q99551 399 aaKnown RBP11.34□□□□□ -0.59
USP53-201ENST00000274030 PLGRKTQ9HBL7 147 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 EVA1BQ9NVM1 165 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 FBXW11Q9UKB1 542 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 RLN1P04808 185 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 RIPK1Q13546 671 aa11.34□□□□□ -0.59
USP53-201ENST00000274030 SUZ12Q15022 739 aaKnown RBP11.34□□□□□ -0.59
USP53-201ENST00000274030 CCL14Q16627 93 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms