RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 TSPAN8P19075 237 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 PIK3R1P27986 724 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 CA5AP35218 305 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 EIF4HQ15056 248 aaKnown RBP15.1■□□□□ 0.01
SF3B4-201ENST00000271628 TCEAL5Q5H9L2 206 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 RARS2Q5T160 578 aaKnown RBP15.1■□□□□ 0.01
SF3B4-201ENST00000271628 GPRC6AQ5T6X5 926 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 IZUMO2Q6UXV1 221 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 CHSY3Q70JA7 882 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 GPR149Q86SP6 731 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 C12orf40Q86WS4 652 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 VN1R2Q8NFZ6 395 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 TRPC4APQ8TEL6 797 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 FAM83CQ9BQN1 747 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 YIPF3Q9GZM5 350 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 EBF3Q9H4W6 596 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 SLC28A3Q9HAS3 691 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 TNFRSF12AQ9NP84 129 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 PDP2Q9P2J9 529 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 CDH22Q9UJ99 828 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 PPM1HQ9ULR3 514 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 TNPO3Q9Y5L0 923 aaKnown RBP15.1■□□□□ 0.01
SF3B4-201ENST00000271628 PRSS21Q9Y6M0 314 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 ATG2AQ2TAZ0 1938 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 IGLV3-16A0A075B6K0 115 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 NCF1BA6NI72 391 aaPredicted RBP15.1■□□□□ 0.01
SF3B4-201ENST00000271628 NCF1CA8MVU1 366 aaPredicted RBP15.1■□□□□ 0.01
SF3B4-201ENST00000271628 GIPC1O14908 333 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 RAD51BO15315 384 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 GPC4O75487 556 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 CBSLP0DN79 551 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 NCF1P14598 390 aaPredicted RBP15.1■□□□□ 0.01
SF3B4-201ENST00000271628 CBSP35520 551 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 DCDC1P59894 354 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 RAB30Q15771 203 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 UGT3A2Q3SY77 523 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 GET4Q7L5D6 327 aaPredicted RBP15.1■□□□□ 0.01
SF3B4-201ENST00000271628 PELI3Q8N2H9 469 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 ZBTB2Q8N680 514 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 GDPD5Q8WTR4 605 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 CATSPER2Q96P56 530 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 FAM126AQ9BYI3 521 aaPredicted RBP15.1■□□□□ 0.01
SF3B4-201ENST00000271628 FAM83DQ9H4H8 585 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 ZBTB26Q9HCK0 441 aa15.1■□□□□ 0.01
SF3B4-201ENST00000271628 EIF3FO00303 357 aaPredicted RBP15.09■□□□□ 0.01
SF3B4-201ENST00000271628 S100BP04271 92 aaPredicted RBP15.09■□□□□ 0.01
SF3B4-201ENST00000271628 CTSLP07711 333 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 ARSAP15289 507 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 TIMP2P16035 220 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 CYLC2Q14093 348 aaPredicted RBP15.09■□□□□ 0.01
SF3B4-201ENST00000271628 HERC3Q15034 1050 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 KANK2Q63ZY3 851 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 CLEC6AQ6EIG7 209 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 DHDDSQ86SQ9 333 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 OR56A4Q8NGH8 313 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 ZNF483Q8TF39 744 aaPredicted RBP15.09■□□□□ 0.01
SF3B4-201ENST00000271628 C19orf60Q96EN9 201 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 SPATA16Q9BXB7 569 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 NKX2-4Q9H2Z4 354 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 PCDH12Q9NPG4 1184 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 PFDN4Q9NQP4 134 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 SMOXQ9NWM0 555 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 KCTD5Q9NXV2 234 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 NFKBIL1Q9UBC1 381 aaPredicted RBP15.09■□□□□ 0.01
SF3B4-201ENST00000271628 DNAJC15Q9Y5T4 150 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 CDH23Q9H251 3354 aa15.09■□□□□ 0.01
SF3B4-201ENST00000271628 LRRC14BA6NHZ5 514 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 UBDO15205 165 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 PRNPP04156 253 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 FESP07332 822 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 HK3P52790 923 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 CDC16Q13042 620 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 LRRC73Q5JTD7 316 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 TMEM198Q66K66 360 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 ERAP2Q6P179 960 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 SBSNQ6UWP8 590 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 TMEM184AQ6ZMB5 413 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 LARP4Q71RC2 724 aaKnown RBP eCLIP15.08■□□□□ 0.012e-7■■□□□ 13.5
SF3B4-201ENST00000271628 EFL1Q7Z2Z2 1120 aaKnown RBP15.08■□□□□ 0.01
SF3B4-201ENST00000271628 RAVER1Q8IY67 606 aaKnown RBP15.08■□□□□ 0.01
SF3B4-201ENST00000271628 FBXW8Q8N3Y1 598 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 CCDC97Q96F63 343 aaPredicted RBP15.08■□□□□ 0.01
SF3B4-201ENST00000271628 ZFYVE19Q96K21 471 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 NSUN5Q96P11 429 aaKnown RBP15.08■□□□□ 0.01
SF3B4-201ENST00000271628 TRAPPC9Q96Q05 1148 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 HGH1Q9BTY7 390 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 IGFLR1Q9H665 355 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 ZFP14Q9HCL3 533 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 SEMA4BQ9NPR2 832 aaPredicted RBP15.08■□□□□ 0.01
SF3B4-201ENST00000271628 PCTPQ9UKL6 214 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 OARD1Q9Y530 152 aa15.08■□□□□ 0.01
SF3B4-201ENST00000271628 COPG1Q9Y678 874 aaKnown RBP15.08■□□□□ 0.01
SF3B4-201ENST00000271628 C16orf96A6NNT2 1141 aa15.08■□□□□ 0
SF3B4-201ENST00000271628 CFAP99D6REC4 459 aa15.08■□□□□ 0
SF3B4-201ENST00000271628 ESRRBO95718 433 aa15.08■□□□□ 0
SF3B4-201ENST00000271628 ENO3P13929 434 aaPredicted RBP15.08■□□□□ 0
SF3B4-201ENST00000271628 ITGB6P18564 788 aa15.08■□□□□ 0
SF3B4-201ENST00000271628 ITGAXP20702 1163 aa15.08■□□□□ 0
SF3B4-201ENST00000271628 CUL3Q13618 768 aa15.08■□□□□ 0
SF3B4-201ENST00000271628 PCBP2Q15366 365 aaKnown RBP eCLIP15.08■□□□□ 02e-6■■■□□ 16.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms