RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CDC6Q99741 560 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 OSGEPL1Q9H4B0 414 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 PRDM8Q9NQV8 689 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 FAM114A2Q9NRY5 505 aa12.55□□□□□ -0.4
SS18-202ENST00000269138 IARS2Q9NSE4 1012 aaKnown RBP12.55□□□□□ -0.4
SS18-202ENST00000269138 EIF3HO15372 352 aaKnown RBP eCLIP12.54□□□□□ -0.4
SS18-202ENST00000269138 TNFSF14O43557 240 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 NDUFS3O75489 264 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 S1PR4O95977 384 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 CEACAM1P13688 526 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 ECHS1P30084 290 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 ID4P47928 161 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 TTPAP49638 278 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 PRLHRP49683 370 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 CLCNKAP51800 687 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 MAZP56270 477 aaKnown RBP12.54□□□□□ -0.4
SS18-202ENST00000269138 NFE2L1Q14494 772 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 TYSND1Q2T9J0 566 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 TEX35Q5T0J7 233 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 ZNF470Q6ECI4 717 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 CAPN12Q6ZSI9 719 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 SDCCAG8Q86SQ7 713 aaPredicted RBP12.54□□□□□ -0.4
SS18-202ENST00000269138 KCNMB4Q86W47 210 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 CILP2Q8IUL8 1156 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 CCNJLQ8IV13 435 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 NAGSQ8N159 534 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 GPR156Q8NFN8 814 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 LKAAEAR1Q8TD35 194 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 PYROXD1Q8WU10 500 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 TTC1Q99614 292 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 CCM2Q9BSQ5 444 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 TOR4AQ9NXH8 423 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 SCHIP1Q9P0W5 487 aaPredicted RBP12.54□□□□□ -0.4
SS18-202ENST00000269138 SLC17A6Q9P2U8 582 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 DNMT3AQ9Y6K1 912 aaPredicted RBP12.54□□□□□ -0.4
SS18-202ENST00000269138 PCNX2A6NKB5 2137 aa12.54□□□□□ -0.4
SS18-202ENST00000269138 CPED1A4D0V7 1026 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 A6NCN8 305 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 MGAT4DA6NG13 374 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 IQCF5A8MTL0 148 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 AP2A2O94973 939 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 CKMT1AP12532 417 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 CKMT2P17540 419 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 ITGB6P18564 788 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 OGNP20774 298 aaKnown RBP12.53□□□□□ -0.4
SS18-202ENST00000269138 RPL10P27635 214 aaKnown RBP12.53□□□□□ -0.4
SS18-202ENST00000269138 PPARGP37231 505 aaPredicted RBP12.53□□□□□ -0.4
SS18-202ENST00000269138 SLC1A2P43004 574 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 MAGEA4P43358 317 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 SIM1P81133 766 aaPredicted RBP12.53□□□□□ -0.4
SS18-202ENST00000269138 DAB2P98082 770 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 MPP1Q00013 466 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 NR0B2Q15466 257 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 SEPT7Q16181 437 aaKnown RBP12.53□□□□□ -0.4
SS18-202ENST00000269138 ZNF658BQ4V348 819 aaPredicted RBP12.53□□□□□ -0.4
SS18-202ENST00000269138 CCDC157Q569K6 752 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 GUSBP11Q6P575 273 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 NAPRTQ6XQN6 538 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 GLRX5Q86SX6 157 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 SLCO6A1Q86UG4 719 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 ARL10Q8N8L6 244 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 OR2L2Q8NH16 312 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 LPGAT1Q92604 370 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 LINC00615Q96LM1 132 aaPredicted RBP12.53□□□□□ -0.4
SS18-202ENST00000269138 C9orf72Q96LT7 481 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 P2RY12Q9H244 342 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 FBXO6Q9NRD1 293 aaPredicted RBP12.53□□□□□ -0.4
SS18-202ENST00000269138 FBXO5Q9UKT4 447 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 PADI4Q9UM07 663 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 WDR37Q9Y2I8 494 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 CRYL1Q9Y2S2 319 aa12.53□□□□□ -0.4
SS18-202ENST00000269138 UBA6A0AVT1 1052 aaPredicted RBP12.52□□□□□ -0.4
SS18-202ENST00000269138 PRMT5O14744 637 aaPredicted RBP12.52□□□□□ -0.4
SS18-202ENST00000269138 CASC3O15234 703 aaKnown RBP12.52□□□□□ -0.4
SS18-202ENST00000269138 BRAFP15056 766 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 SSTR1P30872 391 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 FMO4P31512 558 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 ACADVLP49748 655 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 EIF3BP55884 814 aaKnown RBP12.52□□□□□ -0.4
SS18-202ENST00000269138 DMPKQ09013 629 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 HLTFQ14527 1009 aaKnown RBP eCLIP12.52□□□□□ -0.4
SS18-202ENST00000269138 C14orf28Q4W4Y0 310 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 CTSL3PQ5NE16 218 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 METRNLQ641Q3 311 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 IYDQ6PHW0 289 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 C17orf82Q86X59 251 aaPredicted RBP12.52□□□□□ -0.4
SS18-202ENST00000269138 SPNS2Q8IVW8 549 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 PALM2Q8IXS6 379 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 CFAP206Q8IYR0 622 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 KRT222Q8N1A0 295 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 ARL14Q8N4G2 192 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 CERS2Q96G23 380 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 BIRC8Q96P09 236 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 TCF12Q99081 682 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 FOXP3Q9BZS1 431 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 PPANQ9NQ55 473 aaKnown RBP12.52□□□□□ -0.4
SS18-202ENST00000269138 PSMD13Q9UNM6 376 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 SPTBN4Q9H254 2564 aa12.52□□□□□ -0.4
SS18-202ENST00000269138 CNOT1A5YKK6 2376 aaKnown RBP12.52□□□□□ -0.4
SS18-202ENST00000269138 PDZK1P1A8MUH7 402 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms