RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 SIPA1Q96FS4 1042 aa13.9□□□□□ -0.18
SS18-201ENST00000269137 THOC1Q96FV9 657 aaKnown RBP13.9□□□□□ -0.18
SS18-201ENST00000269137 TMEM237Q96Q45 408 aa13.9□□□□□ -0.18
SS18-201ENST00000269137 ZCCHC2Q9C0B9 1178 aaKnown RBP13.9□□□□□ -0.18
SS18-201ENST00000269137 KCNK13Q9HB14 408 aa13.9□□□□□ -0.18
SS18-201ENST00000269137 FZD4Q9ULV1 537 aa13.9□□□□□ -0.18
SS18-201ENST00000269137 DNAJC16Q9Y2G8 782 aa13.9□□□□□ -0.18
SS18-201ENST00000269137 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.9□□□□□ -0.18
SS18-201ENST00000269137 UBXN8O00124 270 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 INPP4BO15327 924 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 HSPA4LO95757 839 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 TEAD1P28347 426 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 HERVK_113P63132 956 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 RPS21P63220 83 aaKnown RBP13.89□□□□□ -0.19
SS18-201ENST00000269137 GALNT1Q10472 559 aaPredicted RBP13.89□□□□□ -0.19
SS18-201ENST00000269137 ARL13AQ5H913 290 aaPredicted RBP13.89□□□□□ -0.19
SS18-201ENST00000269137 CFAP157Q5JU67 520 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 PLEKHS1Q5SXH7 462 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 KIAA1161Q6NSJ0 714 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 ZNF852Q6ZMS4 543 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 KBTBD6Q86V97 674 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 GPSM1Q86YR5 675 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 CCNYL1Q8N7R7 359 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 RASGEF1AQ8N9B8 481 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 GANCQ8TET4 914 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 PHF21BQ96EK2 531 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 MRGPRX1Q96LB2 322 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 TRMOQ9BU70 441 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 ERVK-6Q9BXR3 956 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 ILKAPQ9H0C8 392 aaPredicted RBP13.89□□□□□ -0.19
SS18-201ENST00000269137 SLC6A17Q9H1V8 727 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 TRIM39Q9HCM9 518 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 CYP4F12Q9HCS2 524 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 KCNK4Q9NYG8 393 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 DCTN4Q9UJW0 460 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 RAP2CQ9Y3L5 183 aa13.89□□□□□ -0.19
SS18-201ENST00000269137 NUMA1Q14980 2115 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 ANKRD12Q6UB98 2062 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 NUAK1O60285 661 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 CD72P21854 359 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 PRLHRP49683 370 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 HK2P52789 917 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 NAA20P61599 178 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 PRKCQQ04759 706 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 IFT88Q13099 833 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 PRKAA1Q13131 559 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 WSCD2Q2TBF2 565 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 MAP7D1Q3KQU3 841 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 ZNF678Q5SXM1 525 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 ZNF648Q5T619 568 aaPredicted RBP13.88□□□□□ -0.19
SS18-201ENST00000269137 PNCKQ6P2M8 343 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 NEK5Q6P3R8 708 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 SBSNQ6UWP8 590 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 TMEM92Q6UXU6 159 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 RAB44Q7Z6P3 723 aaPredicted RBP13.88□□□□□ -0.19
SS18-201ENST00000269137 WDR75Q8IWA0 830 aaKnown RBP13.88□□□□□ -0.19
SS18-201ENST00000269137 LSMEM2Q8N112 164 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 ZNF687Q8N1G0 1237 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 SYNPOQ8N3V7 929 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 PTGR2Q8N8N7 351 aaPredicted RBP13.88□□□□□ -0.19
SS18-201ENST00000269137 C1QTNF2Q9BXJ5 285 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 PREBQ9HCU5 417 aa13.88□□□□□ -0.19
SS18-201ENST00000269137 ZFR2Q9UPR6 939 aaKnown RBP13.88□□□□□ -0.19
SS18-201ENST00000269137 A0A0G2JND7 137 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 CCT8L1PA6NM43 557 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 SUPT3HB4E1H0 165 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 STX16-NPEPL1H3BU86 382 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 STX16O14662 325 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 VEGFDO43915 354 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 SUPT3HO75486 399 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 CHRNB1P11230 501 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 GFAPP14136 432 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 ALOX15P16050 662 aaPredicted RBP13.87□□□□□ -0.19
SS18-201ENST00000269137 ARFIP2P53365 341 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 CTSCP53634 463 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 ADPRHP54922 357 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 TFF2Q03403 129 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 PFKFB4Q16877 469 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 BCL7AQ4VC05 210 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 TMEM259Q4ZIN3 620 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 SEL1L3Q68CR1 1132 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 NEK10Q6ZWH5 1172 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 ADGRG6Q86SQ4 1221 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 ADHFE1Q8IWW8 467 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 FBXO39Q8N4B4 442 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 OR14C36Q8NHC7 312 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 ASZ1Q8WWH4 475 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 MOCOSQ96EN8 888 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 COX14Q96I36 57 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 HIC2Q96JB3 615 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 ZNF514Q96K75 400 aaPredicted RBP13.87□□□□□ -0.19
SS18-201ENST00000269137 RMDN2Q96LZ7 410 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 C1QTNF3Q9BXJ4 246 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 FAM126AQ9BYI3 521 aaPredicted RBP13.87□□□□□ -0.19
SS18-201ENST00000269137 KDM4CQ9H3R0 1056 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 PNPOQ9NVS9 261 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 NUDT4Q9NZJ9 180 aa13.87□□□□□ -0.19
SS18-201ENST00000269137 MARCOQ9UEW3 520 aaPredicted RBP13.87□□□□□ -0.19
SS18-201ENST00000269137 NDRG2Q9UN36 371 aaKnown RBP13.87□□□□□ -0.19
SS18-201ENST00000269137 NCKAP1Q9Y2A7 1128 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms