RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DNAJB13P59910 316 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 ZNF284Q2VY69 593 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 HENMT1Q5T8I9 393 aaKnown RBP16.25■□□□□ 0.19
USP4-201ENST00000265560 SBSNQ6UWP8 590 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 TECPR1Q7Z6L1 1165 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 SLC22A9Q8IVM8 553 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 CNPY4Q8N129 248 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 CSGALNACT1Q8TDX6 532 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 DCUN1D1Q96GG9 259 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 LRCH3Q96II8 777 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 CNDP1Q96KN2 507 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 HBEGFQ99075 208 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 P2RY13Q9BPV8 354 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 ZBTB26Q9HCK0 441 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 TCF7L2Q9NQB0 619 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 SAR1AQ9NR31 198 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 MEI4A8MW99 385 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 SNX2O60749 519 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 H2AFYO75367 372 aaKnown RBP16.25■□□□□ 0.19
USP4-201ENST00000265560 CDK14O94921 469 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 KRT16P08779 473 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 ATP1B2P14415 290 aaPredicted RBP16.25■□□□□ 0.19
USP4-201ENST00000265560 ATP6V0D1P61421 351 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 CCDC15Q0P6D6 951 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 HTR4Q13639 388 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 RHEBL1Q8TAI7 183 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 SLC7A6OSQ96CW6 309 aaPredicted RBP16.25■□□□□ 0.19
USP4-201ENST00000265560 CATSPER2Q96P56 530 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 MKRN2Q9H000 416 aaKnown RBP16.25■□□□□ 0.19
USP4-201ENST00000265560 ZNF106Q9H2Y7 1883 aaKnown RBP16.25■□□□□ 0.19
USP4-201ENST00000265560 C2CD4DB7Z1M9 353 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 WNT9AO14904 365 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 PCDH8O95206 1070 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 ITGB7P26010 798 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 SERPINB5P36952 375 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 TMEM31Q5JXX7 168 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 AADATQ8N5Z0 425 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 GANCQ8TET4 914 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 LRIG1Q96JA1 1093 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 ACTR5Q9H9F9 607 aaPredicted RBP16.25■□□□□ 0.19
USP4-201ENST00000265560 DKK3Q9UBP4 350 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 BTRCQ9Y297 605 aa16.25■□□□□ 0.19
USP4-201ENST00000265560 A0A1W2PP55 124 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 TSPAN11A1L157 253 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 GRXCR2A6NFK2 248 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 NPHS1O60500 1241 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 FSBPO95073 299 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 EGFP01133 1207 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 MTHFRP42898 656 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 SATB1Q01826 763 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 ASPHQ12797 758 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 MACC1Q6ZN28 852 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 ERN2Q76MJ5 926 aaKnown RBP16.24■□□□□ 0.19
USP4-201ENST00000265560 PLA2G15Q8NCC3 412 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 CCDC126Q96EE4 140 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 EGFL8Q99944 293 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 SPATS2LQ9NUQ6 558 aaKnown RBP16.24■□□□□ 0.19
USP4-201ENST00000265560 KIAA1549LQ6ZVL6 1849 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 ESRRAP11474 423 aaPredicted RBP16.24■□□□□ 0.19
USP4-201ENST00000265560 MSH3P20585 1137 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 PREPP48147 710 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 ERFP50548 548 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 BTKQ06187 659 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 RAET1GQ6H3X3 334 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 RINLQ6ZS11 566 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 TRAF6Q9Y4K3 522 aa16.24■□□□□ 0.19
USP4-201ENST00000265560 A0A1W2PQ67 120 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 SOX1O00570 391 aaPredicted RBP16.23■□□□□ 0.19
USP4-201ENST00000265560 NARSO43776 548 aaKnown RBP16.23■□□□□ 0.19
USP4-201ENST00000265560 RPS3P23396 243 aaKnown RBP eCLIP16.23■□□□□ 0.19
USP4-201ENST00000265560 HSPA7P48741 367 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 CLCQ05315 142 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 TCHHL1Q5QJ38 904 aaPredicted RBP16.23■□□□□ 0.19
USP4-201ENST00000265560 RAB44Q7Z6P3 723 aaPredicted RBP16.23■□□□□ 0.19
USP4-201ENST00000265560 MYO1HQ8N1T3 1032 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 RASGEF1AQ8N9B8 481 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 TMIEQ8NEW7 156 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 OR52B6Q8NGF0 335 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 ELMO1Q92556 727 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 SLC45A3Q96JT2 553 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 C3orf30Q96M34 536 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 MYOCQ99972 504 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 OSBPL6Q9BZF3 934 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 IGLON5A6NGN9 336 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 AREL1O15033 823 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 SGTAO43765 313 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 KATNA1O75449 491 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 RNASEH2AO75792 299 aaKnown RBP16.23■□□□□ 0.19
USP4-201ENST00000265560 SERPINA6P08185 405 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 DRD3P35462 400 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 DOK6Q6PKX4 331 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 FAM124AQ86V42 546 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 LENG8Q96PV6 779 aaPredicted RBP16.23■□□□□ 0.19
USP4-201ENST00000265560 CCDC106Q9BWC9 280 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 CD93Q9NPY3 652 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 DNAJC28Q9NX36 388 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 COLQQ9Y215 455 aaPredicted RBP16.23■□□□□ 0.19
USP4-201ENST00000265560 TMEM98Q9Y2Y6 226 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 TSPAN6O43657 245 aa16.23■□□□□ 0.19
USP4-201ENST00000265560 OR56A5P0C7T3 313 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms