RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CDH19Q9H159 772 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 MRPL46Q9H2W6 279 aaKnown RBP8.57□□□□□ -1.04
VPS4B-201ENST00000238497 DONSONQ9NYP3 566 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 EIF2B4Q9UI10 523 aaKnown RBP8.57□□□□□ -1.04
VPS4B-201ENST00000238497 INTS6Q9UL03 887 aaKnown RBP8.57□□□□□ -1.04
VPS4B-201ENST00000238497 CDYLQ9Y232 598 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 NCKAP1Q9Y2A7 1128 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 LNP1A1A4G5 178 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 NPC1O15118 1278 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 OR1I1O60431 355 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 TRIM16O95361 564 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 IGLV3-25P01717 112 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 GNSP15586 552 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 CDKN2DP55273 166 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 GRAMD1BQ3KR37 738 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 ARMC12Q5T9G4 340 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 TMCO4Q5TGY1 634 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 FRMD7Q6ZUT3 714 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 FAM217AQ8IXS0 508 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 ULK2Q8IYT8 1036 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 HDDC3Q8N4P3 179 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 ZNF398Q8TD17 642 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 IMP4Q96G21 291 aaKnown RBP8.57□□□□□ -1.04
VPS4B-201ENST00000238497 CDRT15Q96T59 188 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 BTBD1Q9H0C5 482 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 FBXL12Q9NXK8 326 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 EVLQ9UI08 416 aaPredicted RBP8.57□□□□□ -1.04
VPS4B-201ENST00000238497 SLC25A13Q9UJS0 675 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 ERVW-1Q9UQF0 538 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 C15orf41Q9Y2V0 281 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 TIMM22Q9Y584 194 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 PCNX2A6NKB5 2137 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 UBXN8O00124 270 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 GIPC1O14908 333 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 SNNO75324 88 aaPredicted RBP8.57□□□□□ -1.04
VPS4B-201ENST00000238497 KLHL2O95198 593 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 TBL3Q12788 808 aaKnown RBP8.57□□□□□ -1.04
VPS4B-201ENST00000238497 TSTA3Q13630 321 aaPredicted RBP8.57□□□□□ -1.04
VPS4B-201ENST00000238497 PPP1R3AQ16821 1122 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 CCDC157Q569K6 752 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 SGO1Q5FBB7 561 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 WDR45BQ5MNZ6 344 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 MRNIPQ6NTE8 343 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 BEND5Q7L4P6 421 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 CALML6Q8TD86 181 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 TRPC4APQ8TEL6 797 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 PTCD3Q96EY7 689 aaKnown RBP8.57□□□□□ -1.04
VPS4B-201ENST00000238497 TMEM9BQ9NQ34 198 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 PRSS16Q9NQE7 514 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 TMEM248Q9NWD8 314 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 OXSMQ9NWU1 459 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 FKBPLQ9UIM3 349 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 STOML2Q9UJZ1 356 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 SPO11Q9Y5K1 396 aa8.57□□□□□ -1.04
VPS4B-201ENST00000238497 IGF2RP11717 2491 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 A0A1W2PP55 124 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 MED19A0JLT2 244 aaPredicted RBP8.56□□□□□ -1.04
VPS4B-201ENST00000238497 AP3B1O00203 1094 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 FOXD2O60548 495 aaPredicted RBP8.56□□□□□ -1.04
VPS4B-201ENST00000238497 KATNA1O75449 491 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 ASLP04424 464 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 ACSL1P33121 698 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 KCNC1P48547 511 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 NOVA1P51513 510 aaKnown RBP8.56□□□□□ -1.04
VPS4B-201ENST00000238497 ZNF135P52742 658 aaPredicted RBP8.56□□□□□ -1.04
VPS4B-201ENST00000238497 NDST2P52849 883 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 AGKQ53H12 422 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 ZNF776Q68DI1 518 aaPredicted RBP8.56□□□□□ -1.04
VPS4B-201ENST00000238497 UMODL1-AS1Q8N2C9 162 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 STK40Q8N2I9 435 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 PTGR2Q8N8N7 351 aaPredicted RBP8.56□□□□□ -1.04
VPS4B-201ENST00000238497 OR4L1Q8NH43 312 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 FOXJ1Q92949 421 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 RCN3Q96D15 328 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 MID1IP1Q9NPA3 183 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 CATSPERZQ9NTU4 200 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 SEPT3Q9UH03 358 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 SLC7A8Q9UHI5 535 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 RAI2Q9Y5P3 530 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 C2orf81A6NN90 581 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 BTN3A1O00481 513 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 KLF11O14901 512 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 MID1O15344 667 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 HDAC3O15379 428 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 LTA4HP09960 611 aaKnown RBP8.56□□□□□ -1.04
VPS4B-201ENST00000238497 TPBGLP0DKB5 382 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 UGT1A6P19224 532 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 UGT1A1P22309 533 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 UGT1A4P22310 534 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 UGT1A3P35503 534 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 UGT1A5P35504 534 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 SKIV2L2P42285 1042 aaKnown RBP8.56□□□□□ -1.04
VPS4B-201ENST00000238497 RECQLP46063 649 aaPredicted RBP8.56□□□□□ -1.04
VPS4B-201ENST00000238497 ARCN1P48444 511 aaKnown RBP8.56□□□□□ -1.04
VPS4B-201ENST00000238497 KLF10Q13118 480 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 FAM151BQ6UXP7 276 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 GK5Q6ZS86 529 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 CLDN19Q8N6F1 224 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 OR9I1Q8NGQ6 314 aa8.56□□□□□ -1.04
VPS4B-201ENST00000238497 OR14C36Q8NHC7 312 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms