RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 XRCC1P18887 633 aaPredicted RBP18.95■□□□□ 0.62
CLN3-260ENST00000637578 LIMK2P53671 638 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 GDF10P55107 478 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 UBE2IP63279 158 aaKnown RBP18.95■□□□□ 0.62
CLN3-260ENST00000637578 LDLRAP1Q5SW96 308 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 NKAIN2Q5VXU1 208 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 WASH2PQ6VEQ5 465 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 AVL9Q8NBF6 648 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 SH3KBP1Q96B97 665 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 CAPZA3Q96KX2 299 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 CMKLR1Q99788 373 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 AP1M1Q9BXS5 423 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 WASH6PQ9NQA3 447 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 KCTD3Q9Y597 815 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 AGAP14A8MT82 685 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 HGSO14964 777 aaPredicted RBP18.94■□□□□ 0.62
CLN3-260ENST00000637578 NVLO15381 856 aaKnown RBP18.94■□□□□ 0.62
CLN3-260ENST00000637578 GPR39O43194 453 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 SNX2O60749 519 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 HGFP14210 728 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 CSF2RBP32927 897 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 TRA2AQ13595 282 aaKnown RBP eCLIP18.94■□□□□ 0.62
CLN3-260ENST00000637578 C16orf72Q14CZ0 275 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 ABRAXAS1Q6UWZ7 409 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 ARHGEF18Q6ZSZ5 1173 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 CREG2Q8IUH2 290 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 RASGEF1AQ8N9B8 481 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 OR4K2Q8NGD2 314 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 ZNF398Q8TD17 642 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 KCNE4Q8WWG9 221 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 SLC38A3Q99624 504 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 B3GNT4Q9C0J1 378 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 SCHIP1Q9P0W5 487 aaPredicted RBP18.94■□□□□ 0.62
CLN3-260ENST00000637578 CPNE7Q9UBL6 633 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 PTPRQQ9UMZ3 2332 aa18.94■□□□□ 0.62
CLN3-260ENST00000637578 KCNJ13O60928 360 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 CRTAMO95727 393 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 SLC5A2P31639 672 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 STIP1P31948 543 aaKnown RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 EPHA4P54764 986 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 XIAPP98170 497 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 PDE1BQ01064 536 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 SPARCL1Q14515 664 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 INSCQ1MX18 579 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 PHF19Q5T6S3 580 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 GPRC6AQ5T6X5 926 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 AGAP9Q5VTM2 703 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 TMEM71Q6P5X7 295 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 DRICH1Q6PGQ1 229 aaPredicted RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 ZNF761Q86XN6 746 aaPredicted RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 GDAP1Q8TB36 358 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 CCDC97Q96F63 343 aaPredicted RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 UCK1Q9HA47 277 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 ZNF148Q9UQR1 794 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 DNMT3AQ9Y6K1 912 aaPredicted RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 BPTFQ12830 3046 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 LDB2O43679 373 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 PRAMEF1O95521 474 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 JMJD7P0C870 316 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 THRAP10827 490 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 BRAFP15056 766 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 ZNF140P52738 457 aaPredicted RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 DMPKQ09013 629 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 P3H1Q32P28 736 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 PLA2G4EQ3MJ16 856 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 WDR74Q6RFH5 385 aaPredicted RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 OR10G6Q8NH81 332 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 NAF1Q96HR8 494 aaKnown RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 CCDC74BQ96LY2 380 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 TTC25Q96NG3 672 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 ZCCHC2Q9C0B9 1178 aaKnown RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 OSGEPL1Q9H4B0 414 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 STN1Q9H668 368 aaKnown RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 HOMER3Q9NSC5 361 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 ZNF624Q9P2J8 865 aaPredicted RBP18.93■□□□□ 0.62
CLN3-260ENST00000637578 PISDQ9UG56 409 aa18.93■□□□□ 0.62
CLN3-260ENST00000637578 SRP72O76094 671 aaKnown RBP18.92■□□□□ 0.62
CLN3-260ENST00000637578 ITIH1P19827 911 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 ETV5P41161 510 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 KCNJ1P48048 391 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 CTSCP53634 463 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 NFATC2Q13469 925 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 GTF2H3Q13889 308 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 TRAPPC5Q8IUR0 188 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 LRRC45Q96CN5 670 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 LRRC40Q9H9A6 602 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 TMEM9Q9P0T7 183 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 FKBPLQ9UIM3 349 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 DNAJC16Q9Y2G8 782 aa18.92■□□□□ 0.62
CLN3-260ENST00000637578 LILRA5A6NI73 299 aa18.91■□□□□ 0.62
CLN3-260ENST00000637578 PSMD3O43242 534 aa18.91■□□□□ 0.62
CLN3-260ENST00000637578 AP2A1O95782 977 aa18.91■□□□□ 0.62
CLN3-260ENST00000637578 IDSP22304 550 aa18.91■□□□□ 0.62
CLN3-260ENST00000637578 SLC19A1P41440 591 aa18.91■□□□□ 0.62
CLN3-260ENST00000637578 CYP1B1Q16678 543 aa18.91■□□□□ 0.62
CLN3-260ENST00000637578 RCBTB1Q8NDN9 531 aa18.91■□□□□ 0.62
CLN3-260ENST00000637578 OR13C4Q8NGS5 318 aa18.91■□□□□ 0.62
CLN3-260ENST00000637578 ZNF592Q92610 1267 aa18.91■□□□□ 0.62
CLN3-260ENST00000637578 MAGOHBQ96A72 148 aaKnown RBP18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms