RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 IMPDH1P20839 514 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 MPSTP25325 297 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 COPAP53621 1224 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 CREB5Q02930 508 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 SPRED3Q2MJR0 410 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 CFAP157Q5JU67 520 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 ZNF648Q5T619 568 aaPredicted RBP16.64■□□□□ 0.25
CLN3-252ENST00000636907 AGBL4Q5VU57 503 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 CXorf40AQ8TE69 158 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 GLYATL1Q969I3 302 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 NUS1Q96E22 293 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 L3HYPDHQ96EM0 354 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 PANX3Q96QZ0 392 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 KDM4CQ9H3R0 1056 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 LATS2Q9NRM7 1088 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 RAP2CQ9Y3L5 183 aa16.64■□□□□ 0.25
CLN3-252ENST00000636907 SUPT3HB4E1H0 165 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 CFAP99D6REC4 459 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 SUPT3HO75486 399 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 DCTN3O75935 186 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 MSH3P20585 1137 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 DRD1P21728 446 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 C5AR1P21730 350 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 DGKAP23743 735 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 RGS4P49798 205 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 RPS14P62263 151 aaKnown RBP16.63■□□□□ 0.25
CLN3-252ENST00000636907 PFKFB4Q16877 469 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 ACSBG2Q5FVE4 666 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 ZNF776Q68DI1 518 aaPredicted RBP16.63■□□□□ 0.25
CLN3-252ENST00000636907 SDE2Q6IQ49 451 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.63■□□□□ 0.25
CLN3-252ENST00000636907 RPS27LQ71UM5 84 aaKnown RBP16.63■□□□□ 0.25
CLN3-252ENST00000636907 ZNF765Q7L2R6 523 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 MAVSQ7Z434 540 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 OR2T3Q8NH03 318 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 AGR3Q8TD06 166 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 KCNV2Q8TDN2 545 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 PPM1EQ8WY54 764 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 CNDP1Q96KN2 507 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 SIKE1Q9BRV8 207 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 ILKAPQ9H0C8 392 aaPredicted RBP16.63■□□□□ 0.25
CLN3-252ENST00000636907 HEY2Q9UBP5 337 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 SERGEFQ9UGK8 458 aa16.63■□□□□ 0.25
CLN3-252ENST00000636907 CCDC189A1A4V9 331 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 SYCE1LA8MT33 242 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 ANKRD65E5RJM6 399 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 K7ESM1 405 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 ZNF195O14628 629 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 SGTAO43765 313 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 NARSO43776 548 aaKnown RBP16.62■□□□□ 0.25
CLN3-252ENST00000636907 MAGEC1O60732 1142 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 UBOX5O94941 541 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 KLF8O95600 359 aaPredicted RBP16.62■□□□□ 0.25
CLN3-252ENST00000636907 SOD1P00441 154 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 GFAPP14136 432 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 CCR7P32248 378 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 SERPINB5P36952 375 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 TAS2R38P59533 333 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 CCDC15Q0P6D6 951 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 GRSF1Q12849 480 aaKnown RBP eCLIP16.62■□□□□ 0.25
CLN3-252ENST00000636907 LDLRAP1Q5SW96 308 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 ZNF678Q5SXM1 525 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 HDDC3Q8N4P3 179 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 LRRC37BQ96QE4 947 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 EBF4Q9BQW3 602 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 SHCBP1LQ9BZQ2 653 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 MKRN2Q9H000 416 aaKnown RBP16.62■□□□□ 0.25
CLN3-252ENST00000636907 MYLK2Q9H1R3 596 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 KCTD5Q9NXV2 234 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 ZDHHC2Q9UIJ5 367 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 HAO1Q9UJM8 370 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 PIKFYVEQ9Y2I7 2098 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 A0A1W2PP55 124 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 INPP4BO15327 924 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 HOXB2P14652 356 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 ALOX15P16050 662 aaPredicted RBP16.62■□□□□ 0.25
CLN3-252ENST00000636907 COL9A1P20849 921 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 HK3P52790 923 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 HERVK_113P63132 956 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 PRKAA1Q13131 559 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 STARD3Q14849 445 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 SETDB1Q15047 1291 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 TTLL9Q3SXZ7 439 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 UNC50Q53HI1 259 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 FRMD7Q6ZUT3 714 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 RAB44Q7Z6P3 723 aaPredicted RBP16.62■□□□□ 0.25
CLN3-252ENST00000636907 MTDHQ86UE4 582 aaKnown RBP16.62■□□□□ 0.25
CLN3-252ENST00000636907 GPSM1Q86YR5 675 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 MYO1HQ8N1T3 1032 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 FBXO39Q8N4B4 442 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 SKA1Q96BD8 255 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 CDX2Q99626 313 aaPredicted RBP16.62■□□□□ 0.25
CLN3-252ENST00000636907 ERVK-6Q9BXR3 956 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 WWP1Q9H0M0 922 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 GSTO2Q9H4Y5 243 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 KLHL42Q9P2K6 505 aa16.62■□□□□ 0.25
CLN3-252ENST00000636907 CNOT6Q9ULM6 557 aaKnown RBP16.62■□□□□ 0.25
CLN3-252ENST00000636907 ATG2BQ96BY7 2078 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 A0A1W2PQF6 199 aa16.61■□□□□ 0.25
CLN3-252ENST00000636907 NCF1BA6NI72 391 aaPredicted RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms