RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 EFNA1P20827 205 aaPredicted RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 MED22Q15528 200 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 NOL9Q5SY16 702 aaKnown RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 RIOX2Q8IUF8 465 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 HID1Q8IV36 788 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 LPPQ93052 612 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 PCED1BQ96HM7 432 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 SMAD5Q99717 465 aaKnown RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 YTHDF1Q9BYJ9 559 aaKnown RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 MUC3BQ9H195 1237 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 DCSTAMPQ9H295 470 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 KAT8Q9H7Z6 458 aaKnown RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 MEAF6Q9HAF1 191 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 RPRD1BQ9NQG5 326 aaKnown RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 ARMC1Q9NVT9 282 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 DUSP12Q9UNI6 340 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 RREB1Q92766 1687 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 PNMA8CA0A1B0GUJ8 204 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 SCAMP3O14828 347 aaKnown RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 GPR182O15218 404 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 TNFRSF21O75509 655 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 RCVRNP35243 200 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 AGTR2P50052 363 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 GSTM4Q03013 218 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 NDUFA5Q16718 116 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 UNC50Q53HI1 259 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 SPATA19Q7Z5L4 167 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 ITIH5Q86UX2 942 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 PIK3C3Q8NEB9 887 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 SH3YL1Q96HL8 342 aaPredicted RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 CINPQ9BW66 212 aaPredicted RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 OSBPL2Q9H1P3 480 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 AGPAT4Q9NRZ5 378 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 IKZF3Q9UKT9 509 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 WBP11Q9Y2W2 641 aaKnown RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 DLEC1Q9Y238 1755 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 SLC12A8A0AV02 714 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 CDC7O00311 574 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 CCRL2O00421 344 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 CHRM5P08912 532 aaPredicted RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 MYCLP1P12525 358 aaPredicted RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 CDH1P12830 882 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 ARPC4P59998 168 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 CD47Q08722 323 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 ATP6AP1Q15904 470 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 PAGE3Q5JUK9 113 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 RBM48Q5RL73 367 aaKnown RBP10.93□□□□□ -0.66
CLN3-244ENST00000636147 RAP1GAP2Q684P5 730 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 SCAMP5Q8TAC9 235 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 SGCDQ92629 289 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 CGREF1Q99674 301 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 ELOVL6Q9H5J4 265 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 ERVK-18Q9QC07 812 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 DNAJB9Q9UBS3 223 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 ARL5AQ9Y689 179 aa10.93□□□□□ -0.66
CLN3-244ENST00000636147 NOTOA8MTQ0 251 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 ARVCFO00192 962 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 CBX4O00257 560 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 DCLK1O15075 740 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 MATN3O15232 486 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 CCNCP24863 283 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 GRK3P35626 688 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 MRPL28Q13084 256 aaKnown RBP10.92□□□□□ -0.66
CLN3-244ENST00000636147 GPR153Q6NV75 609 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 ZNF549Q6P9A3 640 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 OR4K2Q8NGD2 314 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 CHPT1Q8WUD6 406 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 KHSRPQ92945 711 aaKnown RBP eCLIP10.92□□□□□ -0.66
CLN3-244ENST00000636147 MYLPFQ96A32 169 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 AURKBQ96GD4 344 aaPredicted RBP10.92□□□□□ -0.66
CLN3-244ENST00000636147 SLC30A3Q99726 388 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 MROH8Q9H579 483 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 TRPV5Q9NQA5 729 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 GMIPQ9P107 970 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 CXCR6O00574 342 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 SLC22A1O15245 554 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 ULK1O75385 1050 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 TULP3O75386 442 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 SERPINA1P01009 418 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 ALDOCP09972 364 aaKnown RBP10.92□□□□□ -0.66
CLN3-244ENST00000636147 COL6A1P12109 1028 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 EEFSECP57772 596 aaKnown RBP10.92□□□□□ -0.66
CLN3-244ENST00000636147 HMGCS1Q01581 520 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 LBX2Q6XYB7 198 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 DSG4Q86SJ6 1040 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 CLEC14AQ86T13 490 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 ANKRD13BQ86YJ7 626 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 PHACTR4Q8IZ21 702 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 MFSD2AQ8NA29 543 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 GPR152Q8TDT2 470 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 STARD8Q92502 1023 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 OTULINQ96BN8 352 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 FCRL5Q96RD9 977 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 KCNS3Q9BQ31 491 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 RMND5AQ9H871 391 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 LTB4R2Q9NPC1 389 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 OGDHLQ9ULD0 1010 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 PCDHGA8Q9Y5G5 932 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 AQP9O43315 295 aa10.92□□□□□ -0.66
CLN3-244ENST00000636147 TLR5O60602 858 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms