RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ATF6P18850 670 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 HRH2P25021 359 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 PTGER3P43115 390 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 ERVPABLB-1P60509 514 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 PRKCZQ05513 592 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 ZBED5Q49AG3 693 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 HID1Q8IV36 788 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 CHCHD4Q8N4Q1 142 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 EXOC2Q96KP1 924 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 ADGRE3Q9BY15 652 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 LRRC3Q9BY71 257 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 P2RY12Q9H244 342 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 CWH43Q9H720 699 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 CD274Q9NZQ7 290 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 SLAMF8Q9P0V8 285 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 SUN2Q9UH99 717 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 GREB1Q4ZG55 1949 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 H7C4K7 107 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 GIPC1O14908 333 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 CA12O43570 354 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 SYNCRIPO60506 623 aaKnown RBP12.62□□□□□ -0.39
LINC00540-203ENST00000631321 SNAP91O60641 907 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 OR4F21O95013 312 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 RHOCP08134 193 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 CAPGP40121 348 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 CLCN7P51798 805 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 ACLYP53396 1101 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 PRKG2Q13237 762 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 PCBP2Q15366 365 aaKnown RBP eCLIP12.62□□□□□ -0.39
LINC00540-203ENST00000631321 TGFBIQ15582 683 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 TIGD2Q4W5G0 525 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 ATP6AP1LQ52LC2 224 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 LRRC23Q53EV4 343 aaPredicted RBP12.62□□□□□ -0.39
LINC00540-203ENST00000631321 RTP2Q5QGT7 225 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 FUT10Q6P4F1 479 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 DHRS4L2Q6PKH6 230 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 SCIMPQ6UWF3 145 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 USP51Q70EK9 711 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 ZNF786Q8N393 782 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 BPIFB1Q8TDL5 484 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 OSCP1Q8WVF1 389 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 OVCA2Q8WZ82 227 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 PLD4Q96BZ4 506 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 CASD1Q96PB1 797 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 C1orf50Q9BV19 199 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 YTHDF1Q9BYJ9 559 aaKnown RBP12.62□□□□□ -0.39
LINC00540-203ENST00000631321 RPF2Q9H7B2 306 aaKnown RBP12.62□□□□□ -0.39
LINC00540-203ENST00000631321 INTS7Q9NVH2 962 aaKnown RBP12.62□□□□□ -0.39
LINC00540-203ENST00000631321 PCDHGC4Q9Y5F7 938 aa12.62□□□□□ -0.39
LINC00540-203ENST00000631321 IFRD1O00458 451 aaPredicted RBP12.61□□□□□ -0.39
LINC00540-203ENST00000631321 EI24O14681 340 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 STX7O15400 261 aaKnown RBP12.61□□□□□ -0.39
LINC00540-203ENST00000631321 LDLRP01130 860 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 PRKAR2AP13861 404 aaKnown RBP12.61□□□□□ -0.39
LINC00540-203ENST00000631321 NCK1P16333 377 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 SLC11A1P49279 550 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 CYBRD1Q53TN4 286 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 LETMD1Q6P1Q0 360 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 DLEU7Q6UYE1 221 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 GPR141Q7Z602 305 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 PATL1Q86TB9 770 aaKnown RBP12.61□□□□□ -0.39
LINC00540-203ENST00000631321 SAPCD2Q86UD0 394 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 RIMKLAQ8IXN7 391 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 CPNE9Q8IYJ1 553 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 STK40Q8N2I9 435 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 SFRP1Q8N474 314 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 CDYL2Q8N8U2 506 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 FNDC5Q8NAU1 212 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 DRAXINQ8NBI3 349 aaPredicted RBP12.61□□□□□ -0.39
LINC00540-203ENST00000631321 BIRC7Q96CA5 298 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 TMEM74Q96NL1 305 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 SEZ6LQ9BYH1 1024 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 SMPD3Q9NY59 655 aaPredicted RBP12.61□□□□□ -0.39
LINC00540-203ENST00000631321 PCDHB3Q9Y5E6 796 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 FADS3Q9Y5Q0 445 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.61□□□□□ -0.39
LINC00540-203ENST00000631321 A0A1B0GVM2 712 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 CLOCKO15516 846 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 ALDH2P05091 517 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 RPS9P46781 194 aaKnown RBP12.61□□□□□ -0.39
LINC00540-203ENST00000631321 SGSHP51688 502 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 EMP3P54852 163 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 ESRRGP62508 458 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 ELAVL2Q12926 359 aaKnown RBP12.61□□□□□ -0.39
LINC00540-203ENST00000631321 TRAF2Q12933 501 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 ZNF177Q13360 481 aaPredicted RBP12.61□□□□□ -0.39
LINC00540-203ENST00000631321 FUT11Q495W5 492 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 ZRANB3Q5FWF4 1079 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 NCEH1Q6PIU2 408 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 ABRAXAS1Q6UWZ7 409 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 ANKS3Q6ZW76 656 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 IFNEQ86WN2 208 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 DENND1CQ8IV53 801 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 DHRSXQ8N5I4 330 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 LEMD2Q8NC56 503 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 PDZD8Q8NEN9 1154 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 OR52B6Q8NGF0 335 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 FAM81AQ8TBF8 368 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 CIDEBQ9UHD4 219 aa12.61□□□□□ -0.39
LINC00540-203ENST00000631321 DHRS7Q9Y394 339 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms