RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ACTR1BP42025 376 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 RPL21P46778 160 aaKnown RBP17.84■□□□□ 0.45
CLN3-239ENST00000628023 CDKN1CP49918 316 aaPredicted RBP17.84■□□□□ 0.45
CLN3-239ENST00000628023 ACTR1AP61163 376 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 CTBSQ01459 385 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 ACVR1Q04771 509 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 INSCQ1MX18 579 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 BBS9Q3SYG4 887 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 FASTKD1Q53R41 847 aaKnown RBP17.84■□□□□ 0.45
CLN3-239ENST00000628023 DNTTIP2Q5QJE6 756 aaKnown RBP17.84■□□□□ 0.45
CLN3-239ENST00000628023 C6orf132Q5T0Z8 1188 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 HIBCHQ6NVY1 386 aaPredicted RBP17.84■□□□□ 0.45
CLN3-239ENST00000628023 LVRNQ6Q4G3 990 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 CES3Q6UWW8 571 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 MICALCLQ6ZW33 695 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 DET1Q7L5Y6 550 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 SERPINA9Q86WD7 417 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 PDIK1LQ8N165 341 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 OR4L1Q8NH43 312 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 HEXDCQ8WVB3 486 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 ZNF669Q96BR6 464 aaPredicted RBP17.84■□□□□ 0.45
CLN3-239ENST00000628023 MFSD3Q96ES6 412 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 TTC1Q99614 292 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 DPEP2Q9H4A9 486 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 PCYT1BQ9Y5K3 369 aaPredicted RBP17.84■□□□□ 0.45
CLN3-239ENST00000628023 WDFY3Q8IZQ1 3526 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 URB1O60287 2271 aaKnown RBP17.84■□□□□ 0.45
CLN3-239ENST00000628023 MAGEB16A2A368 324 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 OR2AG2A6NM03 316 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 KMOO15229 486 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 PRSS56P0CW18 603 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 GIMD1P0DJR0 217 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 VCLP18206 1134 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 FOXN2P32314 431 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 MAGEA3P43357 314 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 DHX9Q08211 1270 aaKnown RBP17.83■□□□□ 0.44
CLN3-239ENST00000628023 ILKQ13418 452 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 CAMK2BQ13554 666 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 HIF1AQ16665 826 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 MARCH9Q86YJ5 346 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 CEP112Q8N8E3 955 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 RASGEF1AQ8N9B8 481 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 GPBAR1Q8TDU6 330 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 HNRNPLLQ8WVV9 542 aaKnown RBP17.83■□□□□ 0.44
CLN3-239ENST00000628023 STAMBPL1Q96FJ0 436 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 APOLD1Q96LR9 279 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 OSGEPL1Q9H4B0 414 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 TREX1Q9NSU2 369 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 CATSPERZQ9NTU4 200 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 ZDHHC3Q9NYG2 299 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 NCKIPSDQ9NZQ3 722 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 TAAR2Q9P1P5 351 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 WHRNQ9P202 907 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 GULP1Q9UBP9 304 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 KCNK6Q9Y257 313 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 PLEKHM1Q9Y4G2 1056 aa17.83■□□□□ 0.44
CLN3-239ENST00000628023 ADAMTS20P59510 1910 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 TRBV5-4A0A0C4DH59 114 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 FAM237BA0A1B0GVD1 139 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 AGAP14A8MT82 685 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 CHUKO15111 745 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 CKMT2P17540 419 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 PBLDP30039 288 aaPredicted RBP17.82■□□□□ 0.44
CLN3-239ENST00000628023 PPARGP37231 505 aaPredicted RBP17.82■□□□□ 0.44
CLN3-239ENST00000628023 RPIAP49247 311 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 ARL4CP56559 192 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 DNAJC3Q13217 504 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 NR0B2Q15466 257 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 DBN1Q16643 649 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 COL28A1Q2UY09 1125 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 PROX2Q3B8N5 592 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 AARS2Q5JTZ9 985 aaKnown RBP17.82■□□□□ 0.44
CLN3-239ENST00000628023 FNBP1LQ5T0N5 605 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 LYPLAL1Q5VWZ2 237 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 TMEM220Q6QAJ8 160 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 PIANPQ8IYJ0 282 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 ARL10Q8N8L6 244 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 NXPE2Q96DL1 559 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 ZNF514Q96K75 400 aaPredicted RBP17.82■□□□□ 0.44
CLN3-239ENST00000628023 BOCQ9BWV1 1114 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 KLC4Q9NSK0 619 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 DNAJC16Q9Y2G8 782 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 RPS6KL1Q9Y6S9 549 aa17.82■□□□□ 0.44
CLN3-239ENST00000628023 VAPBO95292 243 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 ATP1B2P14415 290 aaPredicted RBP17.81■□□□□ 0.44
CLN3-239ENST00000628023 ZNF7P17097 686 aaPredicted RBP17.81■□□□□ 0.44
CLN3-239ENST00000628023 ACADVLP49748 655 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 DUSP3P51452 185 aaPredicted RBP17.81■□□□□ 0.44
CLN3-239ENST00000628023 CTSCP53634 463 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 BIRC2Q13490 618 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 KIAA0930Q6ICG6 404 aaPredicted RBP17.81■□□□□ 0.44
CLN3-239ENST00000628023 CERS6Q6ZMG9 384 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 PDZD3Q86UT5 571 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 NRROSQ86YC3 692 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 FAM181AQ8N9Y4 354 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 KYQ8NBH2 561 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 ZDHHC1Q8WTX9 485 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 SGF29Q96ES7 293 aa17.81■□□□□ 0.44
CLN3-239ENST00000628023 TRIM56Q9BRZ2 755 aaKnown RBP17.81■□□□□ 0.44
CLN3-239ENST00000628023 TIMM29Q9BSF4 260 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms